stamatak
commented
8 years ago I agree,
alexis
On 10.04.2016 13:59, Sarah Lutteropp wrote:
In single-rate PTP, the user can disable the Likelihood-Ratio-Test by setting the p-value to 1.
In multi-rate mPTP, there is currently no option available to disable AIC-Testing. Also, if AIC selects the Null Model, no warning is printed on the screen.
We should change this. Especially because sometimes the rejected Alternative hypothesis of having several species still shows interesting results.
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Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University of Arizona at Tucson
www.exelixis-lab.org
In single-rate PTP, the user can disable the Likelihood-Ratio-Test by setting the p-value to 1.
In multi-rate mPTP, there is currently no option available to disable AIC-Testing. Also, if AIC selects the Null Model, no warning is printed on the screen.
We should change this. Especially because sometimes the rejected alternative hypothesis of having several species still shows interesting results.