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Pasquali-lab / UMI4Cats

An R package for analyzing UMI-4C chromatin contact data.
https://pasquali-lab.github.io/UMI4Cats/
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Single-end? #11

Closed stephanielevon closed 2 years ago

stephanielevon commented 2 years ago

Hi, Is it possible to use UMI4Cats with single-end 4C data? Thanks, Best, Stéphanie

mireia-bioinfo commented 2 years ago

Dear Stéphanie,

UMI4Cats will not work for single end data, as the UMI-4C experimental design requires paired end reads.

Best regards, Mireia