[WIP] BridgeDb 3.0.0-SNAPSHOT

PathVisio / pathvisio

PathVisio - pathway editor, visualization and analysis software

http://www.pathvisio.org

Apache License 2.0

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[WIP] BridgeDb 3.0.0-SNAPSHOT #163

Closed egonw closed 10 months ago

egonw commented 3 years ago

Hi @mkutmon, I created this branch to test the current BridgeDb 3.0.0-SNAPSHOT jars. Some long-deprecated APIs got removed, so it contains several updates. Note that on of the patches actually fixes a bug in PathVisio (Compat.java line 51, which I'll file as a bug report). I can compile and run BridgeDb this way, paving the way for Java 11 support. What this patch does not do, is take advantage of new features. So, for example, it still provides secondary identifiers.

cc @DeniseSl22

egonw commented 3 years ago

I will rebase it to resolve these issues.

egonw commented 3 years ago

@mkutmon, done. Plz try now.

egonw commented 10 months ago

Crap, this was the wrong PR to merge :( My bad. I should have closed it.

This was the correct branch (but no longer): https://github.com/PathVisio/pathvisio/pull/189