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PathVisio / pathvisio

PathVisio - pathway editor, visualization and analysis software
http://www.pathvisio.org
Apache License 2.0
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Errors importing SBML and a SBGN Files #180

Closed jordlang01 closed 2 years ago

jordlang01 commented 2 years ago

Hello,

I downloaded Pathvisio a couple of weeks ago and am encountering a couple of errors. I know Pathvisio connects to the wikipathways database, but I want to import REACTOME and PANTHER pathways, if that's possible. For example, I exported a REACTOME pathway as SBGN and SBML files but received these errors:

SBML error

Exception during conversation See error log for details class java.xml.stream.FactoryConfigurationError

SBGN error

class java.lang.reflect.InvocationTargetException:null See error log for details class org.pathvisio.core.model.ConverterException

Thanks

mkutmon commented 2 years ago

Reactome pathways for human are converted to GPML format and can be browsed and downloaded in WikiPathways (https://www.wikipathways.org/index.php/Portal:Reactome). Panther pathways can currently not be opened in PathVisio.