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PathVisio / pathvisio4-ant

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BridgeDb loaded databases #17

Open DeniseSl22 opened 2 years ago

DeniseSl22 commented 2 years ago

The cmd output shows me that the GeneProtein mapping file is found, however the interaction one is not printed to cmd? image

But, in the main menu, both are recognized: image

DeniseSl22 commented 2 years ago

GeneProtein search works; I can also select an ID (HDAC6 provided me with 3 databases to choose from): image

however the ID is not loaded in the ID field after selecting it (I choose Ensembl for a first try), and gives me an error: image

DeniseSl22 commented 2 years ago

The BridgeDb search menu is placed behind the PV main window (if you don't select an option, but click somewhere else, on a second screen for example), which means that the other buttons of the DataNode will not work, unless you minimalize PV itself and find the pop-up menu: image

DeniseSl22 commented 2 years ago

There is no button to actually load BridgeDb libraries?! @mkutmon @Finterly

Finterly commented 2 years ago

@DeniseSl22 The Load Identifier Mapping> button has been moved to be under File

DeniseSl22 commented 2 years ago

@DeniseSl22 The Load Identifier Mapping> button has been moved to be under File

Okay, great, then I'll check that later ;) How many databases can be loaded at once?