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Pathogen-Genomics-Cymru / lodestone

Mycobacterial pipeline
GNU Affero General Public License v3.0
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Assembly #64

Closed WhalleyT closed 1 month ago

WhalleyT commented 2 months ago

Currently have an INDEL un-aware consensus fasta generated from VCF in Clockwork. Do we need a full assembled genome from scratch?

It looks like the inputs to FN4 is a FASTA aligned to the reference, is that all that's needed?