PathwayAndDataAnalysis / Finkle-PHYS-479

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Write a README file and prepare some examples as test cases #4

Closed nurith closed 2 years ago

nurith commented 2 years ago

Alternatively, you can open an "action" workflow.

nurith commented 2 years ago

A set of instructions inside a file : What is the thing, how to run and build a directory of test cases with expected results.

ozgunbabur commented 2 years ago

I think the README should mention that test.py is already running those tests. But if I try to run test.py, I get errors. This README should guide us on how to successfully run test.py. (create a "data" directory, download .fasta file in it, run build_database.py, etc)

nurith commented 2 years ago

Thanks! But please also show a run example, like a specific command to run.

On 2022-04-07 19:42, AdamFinkleUMB wrote: EXTERNAL SENDER

Closed #4https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FPathwayAndDataAnalysis%2FFinkle-PHYS-479%2Fissues%2F4&data=04%7C01%7Cnurit.haspel%40umb.edu%7Cbeb7a2751b0149d7c8e008da18f04115%7Cb97188711ee94425953c1ace1373eb38%7C0%7C0%7C637849717412687303%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=wtrWVNMxuZt5qKoHy9HLWDQpM572%2B19TTSHFOQTJTWM%3D&reserved=0.

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AdamFinkleUMB commented 2 years ago

Only one command to run so far--the test. It's a module that you'd use while coding.

ozgunbabur commented 2 years ago

Adam, please see my previous comment about documenting the work that we need to do before running test.py.

AdamFinkleUMB commented 2 years ago

Alright, added it!

ozgunbabur commented 2 years ago

Hi Adam, where did you add it? I cannot see it in README.md.

nurith commented 1 year ago

Yeah, exactly.

On 2022-04-08 10:53, Özgün Babur wrote: EXTERNAL SENDER

I think the README should mention that test.py is already running those tests. But if I try to run test.py, I get errors. This README should guide us on how to successfully run test.py. (create a "data" directory, download .fasta file in it, run build_database.py, etc)

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