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PathwayAndDataAnalysis / mutex

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running mutex on cell line data #14

Closed shwetha141 closed 1 year ago

shwetha141 commented 1 year ago

Hello, I ran mutex on a group of genes for cell line data. However when I run it , the message comes as there are zero number of mutex groups. Moreover, I get only the ranked scores file as output and no fdr cut off file. Based on what I understood from the wiki , that one has to map the frd cut off to the scores in the ranked scores. I am sending you a trial file So does this mean there are no mutually exclusive groups. Apologize if these questions are too basic. Breast.txt [parameters.txt] Capture_mutex (https://github.com/PathwayAndDataAnalysis/mutex/files/9940234/parameters.txt)

ozgunbabur commented 1 year ago

Hi Shwetha,

Yes, there are no significant mutex groups in your case. In the top of the ranked-groups.txt file I see two groups with about 0.08 score, which is too high to be considered significant.