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PathwayCommons / cpath2

Biological pathway data integration and access platform (Pathway Commons)
http://www.pathwaycommons.org/pc2/
MIT License
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Providers use 'HGNC' both for the IDs and symbols in xrefs #175

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Data source: any (potentially; currently, seems, Reactome at least does this)

We could fix all such xrefs in the Validator, Cleaner, or a new after-merge 
step (- implement a special case for xref.db='HGNC', to decide between 'HGNC 
Symbol' and 'HGNC' based on the xref.id, in an xref validation rule...)

Original issue reported on code.google.com by rod...@gmail.com on 24 Dec 2013 at 2:12

Attachments:

GoogleCodeExporter commented 9 years ago 
Does not worth fixing, uneasy. And, by the way, cPath2 UniProt converter 
produces both "HGNC" and "HGNC Symbol" xrefs for gene names - from names and 
'DR' records, respectively (see code lines #93 and #294, 
https://code.google.com/p/pathway-commons/source/browse/cpath-impl/src/main/java
/cpath/converter/internal/UniprotConverterImpl.java)

Original comment by rod...@gmail.com on 17 Jan 2014 at 8:29