Failed to execute goal

[GoogleCodeExporter]

What steps will reproduce the problem?
1. mvn clean install -e 

What is the expected output? What do you see instead?
Build was not successful.

Error message: 
Error: Failed to execute goal 
org.apache.maven.plugins:maven-surefire-plugin:2.15:test (default-test) on 
project cpath-api: Execution default-test of goal 
org.apache.maven.plugins:maven-surefire-plugin:2.15:test failed: The forked VM 
terminated without saying properly goodbye. VM crash or System.exit called ?

I've attached a screen shot of the error.

What version of the product are you using? On what operating system?
Using the latest version of pathway commons from the repository.
Operating System: Ubuntu 14.04

Please provide any additional information below.

Original issue reported on code.google.com by xraydiff...@gmail.com on 22 May 2014 at 10:53

Attachments:

• mavenbuild1.png

[GoogleCodeExporter]

What is your goal?

Do you want to build only part of cPath2 project from sources (and need 
technical support) or just want to include cpath-api as dependency for your own 
project? Are you trying to build only cpath-api? Anyway, unless you really 
modify the code, try disabling all JUnit tests (using maven option) first, and 
perhaps you still have to build the entire cpath2 project first.

The project is under active development, and we focus on making a stable (still 
snapshot) version of the s/w and then formally publish its instance (web 
services and data loaded into the db) as pathwaycommons.org/pc2/ resource 
rather that on formally releasing cpath2 as universal software and providing 
technical support. Therefore, usually cPath2 maven artifacts (jars, POMs) are 
NOT available in any public maven repository. Two exceptions are: cpath-api and 
cpath-clinet modules available at 
http://biopax.org/m2repo/snapshots/pathwaycommons/cpath/. In order to use these 
in your java project, just add the public BioPAX repository and the 
dependencies (see the example pom.xml at 
http://code.google.com/p/pathway-commons/wiki/PC2Client).

We also have a Jenkins that periodically builds the entire project from sources 
(see: http://cbiojenkins.no-ip.org:8080/).

Also, in order to tests run/pass, you have to define CPATH2_HOME system (shell) 
environment variable and edit and put those configuration properties files from 
the cpath2 distribution/src/main/etc/ to your $CPATH2_HOME directory; then 
checkout the root cpath2 (parent) project with all members, and execute mvn 
clean install. Probably, it won't go right under OpenJDK (use Oracle JDK7).

Hope this helps.

Original comment by rod...@gmail.com on 29 May 2014 at 5:10

• Changed state: Started

[GoogleCodeExporter]

Updated the issue's tags.

Original comment by rod...@gmail.com on 29 May 2014 at 5:12

• Added labels: Product-cPath2, Type-Other, Priority-Low, OpSys-Linux, Product-Collaboration

[GoogleCodeExporter]

Closing this one: it's not about a bug, nor about our PC project development, 
but rather a general request about how to use maven and java... if any 
questions left, let's answer via email...

Original comment by rod...@gmail.com on 27 Jun 2014 at 9:10

• Changed state: WontFix