I would like to request the following feature:
To pre-compute (particularly, during full-text indexing) and store no. child
pathways, interactions, other (biopax Entity) in the cPath2 biopax Lucene index
(alternatively, can just store the number of all child Entity type objects) for
all documents of types: Pathway, Interaction (including sub-classes), and
Complex (or, why not, - can do so for any Entity sub-class objects, which might
be useful to see how many members are there in generic physical entities...).
We used almost the same approach for computing and storing parent pathway URIs
in the 'pathway' index field, returning that via SearchHit.pathway xml element.
Indexing is one thing; modifying the search XML schema to include the
corresponding new elements (or attributes) will be another change to do
(luckily, this seems backward compatible web service API/schema change; old
cpath-api and cpath-client versions should still be working with the updated
XML results from the new server instance, ignoring new elements/attributes...).
Then, this new information can be shown on the (new, future) "Find/Top
Pathways" web site page (/view#/pw/) and in the GUI of CyPathwayCommons
(CyPath2) app for Cytoscape 3.
Original issue reported on code.google.com by rod...@gmail.com on 3 Jul 2014 at 8:46
Original issue reported on code.google.com by
rod...@gmail.com
on 3 Jul 2014 at 8:46