A separate owl file for reaction-level data

[GoogleCodeExporter]

The new All.BIOPAX.owl archive is huge. I want to test graph queries that does 
not traverse over molecular interactions, but loading this file takes too much 
time due to the new molecular interactions. For easier processing, I would like 
to have another archive file that does not contain molecular interaction data. 
This new archive may contain only Reactome, NCI, HumanCyc, Panther, and 
PhosphoSitePlus.

Similarly, another archive that contain only molecular interaction data can be 
useful for other use cases.

Original issue reported on code.google.com by ozgunba...@gmail.com on 22 Jul 2014 at 1:49

[GoogleCodeExporter]

Modified the -export command in the cpath.admin.Admin class (run via the 
cpath2-cli.sh script) to accept additional arguments: --datasources=... and 
--types=... (the latter wasn't required for this ticket but is useful for the 
future use cases).
Generated a new archive "Pathway Commons.5.Detailed_Process_Data.owl.gz" and 
put in into /downloads (on the test instance at UofT). The file was created 
using the command:
sh cpath2-cli.sh -export out.owl 
--datasources=reactome,pid,phosphosite,humancyc,panther (then the file was 
renamed, gzipped, and moved).

Original comment by rod...@gmail.com on 28 Jul 2014 at 10:04

• Changed state: Fixed