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PathwayCommons / cpath2

Biological pathway data integration and access platform (Pathway Commons)
http://www.pathwaycommons.org/pc2/
MIT License
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Truncated pathway names in extended SIF (mostly KEGG pathways) #215

Closed IgorRodchenkov closed 9 years ago

IgorRodchenkov commented 9 years ago

Our input KEGG hsa* pathway data (translated to BioPAX) contain both displayName and standardName, and other names, and the displayName is often shortened, e.g.,

This ideally must be fixed in https://github.com/BioPAX/pattern module (i.e., use standardName, if present, instead displayName)... but I'd also hack it on PC2 side for the next release - simply replace pathway.displayName with long standardName for KEGG only...