IgorRodchenkov
commented
7 years ago FYI: this happened mostly when a user sent a very long malformed gene list (IDs must be separated with comas - not with spaces, etc..) via pcviz query URL.
Fixed (cache file name is now generated from the sorted IDs using MD5 hash), closed.
E.g. (despite someone sent weird and too long ID list) :
java.nio.file.FileSystemException: data/cached/networks/-PROM1TACO1 TCP10C ATXN2 PANX1 2810004N23RIK ADAMTS5 DDX3Y LRRN2 NSUN2 VIM - MDM1 GLIS3 FLNA PAX6 PPIF - ACTB DES EEF2 RBBP8 GOLGA7B UBE3B - CYP26B1 SLC29A1 C6 IPMK SAR1B - YWHAE LYSMD2 VMN1R194 LONRF3 YLPM1 - NFX1 TGFBR2 PTPN12 MTMR3 UNC5B CDK5RAP3 IDH1 IFT74 SRSF7 - SLAIN2 FBXW11 PSME1 - VIM - FAM19A2 - DDC RIOK2 TCP10C LDOC1L VIM TPM4 TICAM1 GM4858 - - PODN - CALR P4HA1 FAM76B XPO5 ADAMTSL1 INTS6L CTNNA1 - FABP12 UBR3 PLG PROM1 - LTBP3 - - PLA2G4A DES MIGA2 MFHAS1 PIWIL4 CEP63 BAZ1A - DCXR LGALS3 PRG4 OLFR572 - - - SLC22A19 APRT - - - - ADCK5 - BFSP2 - TACO1 PTPN21 MYO6 MIOS - CDCA8 TCP10A SEC11A - PCDH15 OTX2 DNAJC27 ARF2 MCG1038069 PDIA3 - NNAT - SRSY PPP1R9A HSPA8 INPP4A - EEF1G DIAPH1 - - SLC25A21 ABCD2 RPL5 DLGAP1 CACNA1E ITPR3 FSIP2 ATP4A - ACTB - - - SCHIP1 SATB2 - FAM114A1 - KCTD1 RPS6KC1 CTTNBP2NL PTPRJ ZFP128 C1RA - WDR19 H2AFJ RPL23 ELL ST18 RPL18 RPL18 WDR19 ARHGEF17 RMND5A - DGKG KHDC3 KRT72 - RPS8 - MKL1 - SLC26A2 GLUD1 RGS6 - RPL34 - - PSMA3 SREK1 - WISP1 - PARK7 MTCL1 EED - - HNRNPR GRN - METTL3 WWP1 - PHLDA1 - - - MKL1P84022.json: File name too long at sun.nio.fs.UnixException.translateToIOException(UnixException.java:91) ~[na:1.8.0_66] at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102) ~[na:1.8.0_66] at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107) ~[na:1.8.0_66] at sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:214) ~[na:1.8.0_66] at java.nio.file.spi.FileSystemProvider.newOutputStream(FileSystemProvider.java:434) ~[na:1.8.0_66] at java.nio.file.Files.newOutputStream(Files.java:216) ~[na:1.8.0_66] at java.nio.file.Files.write(Files.java:3292) ~[na:1.8.0_66] at org.pathwaycommons.pcviz.service.PathwayCommonsService.createNetwork(PathwayCommonsService.java:183) ~[classes!/:2.3.0-SNAPSHOT] at org.pathwaycommons.pcviz.service.PathwayCommonsService$$FastClassBySpringCGLIB$$e544089e.invoke() ~[classes!/:2.3.0-SNAPSHOT]
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