PathwayMerger / PathMe

Harmonizing pathway databases using Biological Expression Language (BEL)
https://pathme.scai.fraunhofer.de/
Apache License 2.0
17 stars 2 forks source link

could not install pathme, and I found a solution #40

Open flalix opened 1 year ago

flalix commented 1 year ago

Possibly, pathme (and viewer) cannot be installed with python 3.8 or greater. Perhaps due to 'compath'.

I tried in many ways and did not find a solution.

Looking at the docker example, I realize that it looks for python 3.65

Therefore, I did the following code that worked fine,

conda create -n net36_env python=3.6 conda activate net36_env

conda install -y -c anaconda numpy scipy jupyter

pip install --upgrade pip

python3 -m pip install pathme python3 -m pip install pathme-viewer

ddomingof commented 2 months ago

Thank you for posting this!