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PatrickChrist / LITS-CHALLENGE

INFORMATION FOR THE LIVER TUMOR SEGMENTATION CHALLENGE
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Execution time limit exceeded #9

Closed seddik11 closed 5 years ago

seddik11 commented 5 years ago

After running for a couple of hours my submission failed due to "Time limit exceeded" error so i'm wondering what is the cause of this error ? is it a low time limit set by the organizers ? or it is related to a particular issue on codalab ? or is it even a problem in my submission ? any hint please

seddik11 commented 5 years ago

This is my scoring output log

Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-0.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-0.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-0.nii Done loading files (0.40 seconds) Done finding connected components (7.03 seconds) Done identifying detected lesions (9.25 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.34 seconds) Done computing tumor burden diff (0.14 seconds) Done processing volume (total time: 17.16 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-1.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-1.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-1.nii Done loading files (1.17 seconds) Done finding connected components (11.88 seconds) Done identifying detected lesions (19.77 seconds) Done computing lesion scores (1.54 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.52 seconds) Done computing tumor burden diff (0.22 seconds) Done processing volume (total time: 35.10 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-10.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-10.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-10.nii Done loading files (3.04 seconds) Done finding connected components (9.49 seconds) Done identifying detected lesions (36.68 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.43 seconds) Done computing tumor burden diff (0.18 seconds) Done processing volume (total time: 49.82 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-11.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-11.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-11.nii Done loading files (1.43 seconds) Done finding connected components (9.56 seconds) Done identifying detected lesions (14.35 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.44 seconds) Done computing tumor burden diff (0.19 seconds) Done processing volume (total time: 25.96 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-12.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-12.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-12.nii Done loading files (0.51 seconds) Done finding connected components (2.86 seconds) Done identifying detected lesions (10.77 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.19 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 14.41 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-13.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-13.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-13.nii Done loading files (0.53 seconds) Done finding connected components (3.38 seconds) Done identifying detected lesions (17.98 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.21 seconds) Done computing tumor burden diff (0.08 seconds) Done processing volume (total time: 22.18 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-14.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-14.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-14.nii Done loading files (0.59 seconds) Done finding connected components (2.34 seconds) Done identifying detected lesions (9.66 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.19 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 12.85 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-15.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-15.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-15.nii Done loading files (2.99 seconds) Done finding connected components (5.89 seconds) Done identifying detected lesions (33.84 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.30 seconds) Done computing tumor burden diff (0.11 seconds) Done processing volume (total time: 43.13 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-16.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-16.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-16.nii Done loading files (1.90 seconds) Done finding connected components (2.73 seconds) Done identifying detected lesions (15.16 seconds) Done computing lesion scores (0.72 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.19 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 20.77 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-17.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-17.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-17.nii Done loading files (16.30 seconds) Done finding connected components (53.27 seconds) Done identifying detected lesions (1119.77 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (2.03 seconds) Done computing tumor burden diff (0.88 seconds) Done processing volume (total time: 1192.25 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-18.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-18.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-18.nii Done loading files (3.14 seconds) Done finding connected components (7.87 seconds) Done identifying detected lesions (33.97 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.37 seconds) Done computing tumor burden diff (0.16 seconds) Done processing volume (total time: 45.51 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-19.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-19.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-19.nii Done loading files (1.63 seconds) Done finding connected components (2.01 seconds) Done identifying detected lesions (8.60 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.17 seconds) Done computing tumor burden diff (0.06 seconds) Done processing volume (total time: 12.48 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-2.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-2.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-2.nii Done loading files (1.13 seconds) Done finding connected components (12.94 seconds) Done identifying detected lesions (7.57 seconds) Done computing lesion scores (1.29 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.55 seconds) Done computing tumor burden diff (0.24 seconds) Done processing volume (total time: 23.72 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-20.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-20.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-20.nii Done loading files (3.99 seconds) Done finding connected components (9.54 seconds) Done identifying detected lesions (17.99 seconds) Done computing lesion scores (0.99 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.43 seconds) Done computing tumor burden diff (0.18 seconds) Done processing volume (total time: 33.14 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-21.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-21.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-21.nii Done loading files (3.72 seconds) Done finding connected components (9.00 seconds) Done identifying detected lesions (11.43 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.42 seconds) Done computing tumor burden diff (0.17 seconds) Done processing volume (total time: 24.74 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-22.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-22.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-22.nii Done loading files (1.47 seconds) Done finding connected components (2.18 seconds) Done identifying detected lesions (15.22 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.18 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 19.11 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-23.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-23.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-23.nii Done loading files (1.76 seconds) Done finding connected components (1.99 seconds) Done identifying detected lesions (9.70 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.17 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 13.69 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-24.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-24.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-24.nii Done loading files (1.91 seconds) Done finding connected components (2.86 seconds) Done identifying detected lesions (7.13 seconds) Done computing lesion scores (0.48 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.20 seconds) Done computing tumor burden diff (0.08 seconds) Done processing volume (total time: 12.66 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-25.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-25.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-25.nii Done loading files (1.70 seconds) Done finding connected components (2.34 seconds) Done identifying detected lesions (22.19 seconds) Done computing lesion scores (0.42 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.17 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 26.90 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-26.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-26.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-26.nii Done loading files (2.00 seconds) Done finding connected components (3.74 seconds) Done identifying detected lesions (5.47 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.24 seconds) Done computing tumor burden diff (0.09 seconds) Done processing volume (total time: 11.55 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-27.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-27.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-27.nii Done loading files (1.71 seconds) Done finding connected components (2.22 seconds) Done identifying detected lesions (8.52 seconds) Done computing lesion scores (0.43 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.19 seconds) Done computing tumor burden diff (0.07 seconds) Done processing volume (total time: 13.14 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-28.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-28.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-28.nii Done loading files (1.42 seconds) Done finding connected components (1.48 seconds) Done identifying detected lesions (3.75 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.15 seconds) Done computing tumor burden diff (0.06 seconds) Done processing volume (total time: 6.87 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-29.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-29.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-29.nii Done loading files (3.98 seconds) Done finding connected components (10.64 seconds) Done identifying detected lesions (67.82 seconds) Done computing lesion scores (1.10 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.47 seconds) Done computing tumor burden diff (0.20 seconds) Done processing volume (total time: 84.20 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-3.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-3.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-3.nii Done loading files (1.35 seconds) Done finding connected components (13.42 seconds) Done identifying detected lesions (97.58 seconds) Done computing lesion scores (2.20 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.56 seconds) Done computing tumor burden diff (0.24 seconds) Done processing volume (total time: 115.35 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-30.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-30.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-30.nii Done loading files (3.48 seconds) Done finding connected components (44.85 seconds) Done identifying detected lesions (1561.89 seconds) Done computing lesion scores (4.21 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.71 seconds) Done computing tumor burden diff (0.75 seconds) Done processing volume (total time: 1616.89 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-31.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-31.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-31.nii Done loading files (3.26 seconds) Done finding connected components (40.20 seconds) Done identifying detected lesions (0.48 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.59 seconds) Done computing tumor burden diff (0.67 seconds) Done processing volume (total time: 46.21 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-32.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-32.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-32.nii Done loading files (2.68 seconds) Done finding connected components (34.78 seconds) Done identifying detected lesions (990.16 seconds) Done computing lesion scores (6.75 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.38 seconds) Done computing tumor burden diff (0.60 seconds) Done processing volume (total time: 1036.36 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-33.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-33.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-33.nii Done loading files (2.92 seconds) Done finding connected components (35.24 seconds) Done identifying detected lesions (444.28 seconds) Done computing lesion scores (5.36 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.40 seconds) Done computing tumor burden diff (0.61 seconds) Done processing volume (total time: 489.81 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-34.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-34.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-34.nii Done loading files (4.06 seconds) Done finding connected components (50.44 seconds) Done identifying detected lesions (3217.95 seconds) Done computing lesion scores (11.05 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (2.04 seconds) Done computing tumor burden diff (0.89 seconds) Done processing volume (total time: 3286.43 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-35.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-35.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-35.nii Done loading files (4.30 seconds) Done finding connected components (50.37 seconds) Done identifying detected lesions (140.18 seconds) Done computing lesion scores (8.88 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (2.07 seconds) Done computing tumor burden diff (0.87 seconds) Done processing volume (total time: 206.66 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-36.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-36.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-36.nii Done loading files (4.62 seconds) Done finding connected components (48.24 seconds) Done identifying detected lesions (613.55 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.91 seconds) Done computing tumor burden diff (0.83 seconds) Done processing volume (total time: 669.15 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-37.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-37.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-37.nii Done loading files (2.24 seconds) Done finding connected components (24.58 seconds) Done identifying detected lesions (1133.44 seconds) Done computing lesion scores (8.50 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.01 seconds) Done computing tumor burden diff (0.43 seconds) Done processing volume (total time: 1170.20 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-38.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-38.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-38.nii Done loading files (4.72 seconds) Done finding connected components (53.21 seconds) Done identifying detected lesions (368.31 seconds) Done computing lesion scores (5.39 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (2.16 seconds) Done computing tumor burden diff (0.92 seconds) Done processing volume (total time: 434.70 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-39.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-39.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-39.nii Done loading files (2.51 seconds) Done finding connected components (24.17 seconds) Done identifying detected lesions (0.29 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.00 seconds) Done computing tumor burden diff (0.43 seconds) Done processing volume (total time: 28.40 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-4.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-4.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-4.nii Done loading files (1.26 seconds) Done finding connected components (9.62 seconds) Done identifying detected lesions (28.39 seconds) Done computing lesion scores (1.46 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.45 seconds) Done computing tumor burden diff (0.19 seconds) Done processing volume (total time: 41.37 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-40.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-40.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-40.nii Done loading files (5.12 seconds) Done finding connected components (54.90 seconds) Done identifying detected lesions (860.88 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (2.16 seconds) Done computing tumor burden diff (0.92 seconds) Done processing volume (total time: 923.98 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-41.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-41.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-41.nii Done loading files (3.31 seconds) Done finding connected components (36.72 seconds) Done identifying detected lesions (3360.29 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (1.46 seconds) Done computing tumor burden diff (0.62 seconds) Done processing volume (total time: 3402.39 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-42.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-42.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-42.nii Done loading files (0.45 seconds) Done finding connected components (0.37 seconds) Done identifying detected lesions (5.98 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.09 seconds) Done computing tumor burden diff (0.03 seconds) Done processing volume (total time: 6.92 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-43.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-43.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-43.nii Done loading files (0.46 seconds) Done finding connected components (0.53 seconds) Done identifying detected lesions (9.44 seconds) Done computing lesion scores (0.26 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.11 seconds) Done computing tumor burden diff (0.04 seconds) Done processing volume (total time: 10.85 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-44.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-44.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-44.nii Done loading files (0.87 seconds) Done finding connected components (4.89 seconds) Done identifying detected lesions (35.08 seconds) Done computing lesion scores (0.65 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.27 seconds) Done computing tumor burden diff (0.11 seconds) Done processing volume (total time: 41.88 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-45.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-45.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-45.nii Done loading files (1.09 seconds) Done finding connected components (4.98 seconds) Done identifying detected lesions (14.24 seconds) No lesions detected, skipping lesion score evaluation No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.27 seconds) Done computing tumor burden diff (0.11 seconds) Done processing volume (total time: 20.69 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-46.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-46.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-46.nii Done loading files (2.84 seconds) Done finding connected components (21.61 seconds) Done identifying detected lesions (62.25 seconds) Done computing lesion scores (3.22 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.87 seconds) Done computing tumor burden diff (0.37 seconds) Done processing volume (total time: 91.16 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-47.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-47.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-47.nii Done loading files (1.24 seconds) Done finding connected components (13.26 seconds) Done identifying detected lesions (186.61 seconds) Done computing lesion scores (2.28 seconds) No liver label provided, skipping liver score evaluation Done computing additional dice scores (0.56 seconds) Done computing tumor burden diff (0.24 seconds) Done processing volume (total time: 204.19 seconds) Starting with volume /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-48.nii Found corresponding submission file /tmp/codalab/tmpuHXWVu/run/input/ref/test-segmentation-48.nii for reference file /tmp/codalab/tmpuHXWVu/run/input/res/test-segmentation-48.nii Done loading files (2.94 seconds) Done finding connected components (22.39 seconds)

seddik11 commented 5 years ago

finally the problem is solved i will explain later how i solved it