Option 'z, cacheSpectraToDisk' does not evaluate as positive if present but not set to true

[mwalzer]

From --help, option z looks like a flag but using it like one yields

Singularity> SwaMe.Console -z -i split_napedro_L120420_010_SW-400AQUA__human_2ul_dilution_1_1.nf.pp.mzML  
SwaMe.Console 1.0.0
Copyright (C) 2020 SwaMe.Console

ERROR(S):
  Option 'z, cacheSpectraToDisk' has no value.

Am I supposed to set it to true? Seems that is working in so far as I get to the ouput described in #127

[marinaPauw]

Hello! Yes, the idea is to specify a bool after so: -z true or -z false.

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On Mon, Mar 2, 2020 at 12:27 PM Mathias Walzer notifications@github.com wrote:

From --help, option z looks like a flag but using it like one yields

Singularity> SwaMe.Console -z -i split_napedro_L120420_010_SW-400AQUA__human_2ul_dilution_1_1.nf.pp.mzML SwaMe.Console 1.0.0 Copyright (C) 2020 SwaMe.Console

ERROR(S): Option 'z, cacheSpectraToDisk' has no value.

Am I supposed to set it to true? Seems that is working in so far as I get to the ouput described in #127 https://github.com/PaulBrack/Yamato/issues/127

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[PaulBrack]

@mwalzer agreed that the behaviour of this variable requiring an argument is confusing - this should default to false and evaluate to true on presence

[PaulBrack]

@mwalzer amended in 81f2a908936a1f346ef5a6e2d93b9f24198875b6