Flag tile bug

[gemmaanderson]

obs_flat_tile.sh is not running. Complains that the list of tiles for flagging does not exist. I have tried different input variations and removing/adding lines to the flagging file. See examples below

> ./bin/obs_flag_tiles.sh -f processing/1217495184_tile_to_flag.txt 1217495184
flagging file doesn't exist: /astro/mwasci/phancock/D0009//processing/1217495184_tiles_to_flag.txt
not submitting job
> ./bin/obs_flag_tiles.sh -f 1217495184_tile_to_flag.txt 1217495184
flagging file doesn't exist: /astro/mwasci/phancock/D0009//processing/1217495184_tiles_to_flag.txt
not submitting job
> ./bin/obs_flag_tiles.sh 1217495184
realpath: missing operand
Try 'realpath --help' for more information.
flagging file doesn't exist: 
not submitting job

[PaulHancock]

Three issues here:

• I was looking at obs_flag.sh during debugging. Somehow this also tries to do the tile flagging. I have changed this so that obs_flag.sh does only the aoflagger flagging.
• There was a bug such that the supplied file was being ignored (now fixed).
• The default file should be called ..._tiles_to flag.txt (plural) which is why the script didn't find your example file.

[PaulHancock]

All fixed, and the documentation has been updated.