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PaulingLiu / scibet

A portable and fast single cell type identifier
BSD 3-Clause "New" or "Revised" License
62 stars 11 forks source link

Segfault with SelectGene function #2

Open r-melo opened 4 years ago

r-melo commented 4 years ago

Hi,

I'm trying to get a gene list, but I get a segmentation fault. I couldn't install on windows so I istalled on WSL linux. The error I get is presented below:

` caught segfault address (nil), cause 'memory not mapped'

Traceback: 1: DsGene(expr, labels_in, as_df, k, 0, n_threads) 2: SelectGene(data_mat, k = 50) `

Thanks

hxretlcw commented 4 years ago

We are now developing a pure R implementation of SciBet for Windows users, which will be released in around 2 weeks.

xiebb123456 commented 4 years ago

Hi, I met the same problem, this happen on linux not windows, how to solve it on linux?

hxretlcw commented 4 years ago

Could you please provide more detailed information including OS version, R version or session info for us to debug? In current situation, please use the pure R implementation temporarily (https://github.com/zwj-tina/scibetR/blob/master/R/SciBetR.R)

ZhouCheer commented 4 years ago

expr last column should be "label",add this information,