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PavlidisLab / Gemma

Genomics data re-analysis
Apache License 2.0
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Compute ranks when vectors are created #1126

Open arteymix opened 4 months ago

arteymix commented 4 months ago

We spend a significant amount of time updating ranks on freshly created vectors that could be cut down by inserting vectors with ranks.

We could also compute ranks with SQL without retrieving data altogether

arteymix commented 4 months ago

Once that is done, we can make vectors immutable like we did for analyses.

arteymix commented 2 months ago

This might help mitigate transaction timeout errors curators are experiencing when running makeProcessedData.