PavlidisLab / Gemma

Genomics data re-analysis
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Assays page does not load bioassays table so outliers cannot be removed #12

Closed cindycri closed 7 years ago

cindycri commented 7 years ago

When trying to load the assays page for eeID 6136 (http://www.chibi.ubc.ca/Gemma/expressionExperiment/showBioAssaysFromExpressionExperiment.html?id=6136) the following error comes up:

Error during read java.lang.RuntimeException: Message: java.lang.NoSuchMethodException: ubic.gemma.analysis.preprocess.OutlierDetails.getBioAssayId() Details: ubic.gemma.util.EntityUtils.getId (72) ubic.gemma.util.EntityUtils.getIdMap (99) ubic.gemma.web.controller.expression.bioAssay.BioAssayController.getBioAssays (95) org.springframework.cglib.proxy.MethodProxy.invoke (204) org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint (698) org.springframework.aop.framework.ReflectiveMethodInvocation.proceed (150) org.springframework.aop.framework.ReflectiveMethodInvocation.proceed (166) org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke (91) org.springframework.aop.framework.ReflectiveMethodInvocation.proceed (172) org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept (631) sun.reflect.NativeMethodAccessorImpl.invoke (57) sun.reflect.DelegatingMethodAccessorImpl.invoke (43) java.lang.reflect.Method.invoke (601) org.directwebremoting.impl.ExecuteAjaxFilter.doFilter (34) org.directwebremoting.impl.DefaultRemoter$1.doFilter (428) org.directwebremoting.impl.DefaultRemoter.execute (431) org.directwebremoting.impl.DefaultRemoter.execute (283) org.directwebremoting.servlet.PlainCallHandler.handle (52) ... (truncated)

After clicking ok the table which shows the bioassays is blank. This has happened with a couple other experiments but I didn't make a note of which ones.

tesar-stepan commented 7 years ago

Already logged and taken care of as issue https://github.com/ppavlidis/Gemma/issues/11 Will be rolled out soon.

Keeping this issue open to prevent further duplicates.

tesar-stepan commented 7 years ago

Fixed in release 1.11 (commit 159c488e09314d84112a1fe29601f54497f7de1c)