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PavlidisLab / Gemma

Genomics data re-analysis
Apache License 2.0
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Searching for "brain" experiments returns error #87

Closed nzllim closed 4 years ago

nzllim commented 4 years ago

Steps to reproduce:

  1. Search for "brain", constraint search for experiments.

Gemma returns an error: "Error during read [object Object]".

nzllim commented 4 years ago

UPDATE:

  1. Searching with "liver", "lung", "heart", "astrocyte" or "microglial" does not return the same error (experiments are listed as should).
  2. Searching with "cancer", "tumor" reproduces the error ("tumour" however works fine).

Could the size of the results (e.g. more than 1000 experiments?) be the cause of the error?

ppavlidis commented 4 years ago

it looks like it just is timing out, so it is likely related to the size of the results. That error message you see in the client is generic (we should handle it better) and you can see the actual response in the browser developer tools

ppavlidis commented 4 years ago

I am tentatively closing this issue as we were able to get performance up to a good level (esp once caches are warmed up).