Make it an error to import data for which there is no known probe

PavlidisLab / Gemma

Genomics data re-analysis

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Make it an error to import data for which there is no known probe #973

Open arteymix opened 9 months ago

arteymix commented 9 months ago

Importing data that has missing probes in a platform is currently producing a warning that is too easily dismissed.

Missing probes are indicative of a problem with the platform.

This issue should not occur from now on as @ppavlidis made sure our generic platforms contain all the IDs that the RNA-Seq pipeline produces expression values for.

arteymix commented 9 months ago

There are missing probes for some of our older platforms. We will evaluate if it is worth backfilling them.