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PayamDiba / SERGIO

A simulator for single-cell expression data guided by gene regulatory networks
GNU General Public License v3.0
55 stars 28 forks source link

pypi usage #25

Open nlapier2 opened 5 months ago

nlapier2 commented 5 months ago

Hello,

I am unfortunately having issues using the pypi version of the package.

The pypi page currently says to run "from sergio import sergio". But this module is not found. It turns out the name is SERGIO. So then I run "from SERGIO import sergio" and that works fine. But then when I try to run the example line

sim = sergio(number_genes=100, number_bins = 9, number_sc = 300, noise_params = 1, decays=0.8, sampling_state=15, noise_type='dpd')

I get an error:

>>> sim = sergio(number_genes=100, number_bins = 9, number_sc = 300, noise_params = 1, decays=0.8, sampling_state=15, noise_type='dpd')
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
TypeError: sergio.__init__() got an unexpected keyword argument 'number_genes'

It does not seem to have the other arguments either. Any help with this is much appreciated.