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PayneLab / cptac

Python packaging for CPTAC data
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why don't you analyze some gastric cancer in CPTAC ? #8

Closed zihaoxingstudy1 closed 4 years ago

zihaoxingstudy1 commented 4 years ago

there are also some gastric cancer can be analyzed in CPTAC

samuelpayne commented 4 years ago

Hello,

this package is created currently for just CPTAC data, which does not include gastric cancer. I do know that other groups have created proteogenomic data for gastric cancer (https://pubmed.ncbi.nlm.nih.gov/30645970), but that it outside the current scope of our tool. If you are part of this group, we'd be interested in chatting

samuelpayne commented 4 years ago

i mean the Korean group that did the gastric cancer paper

zihaoxingstudy1 commented 4 years ago 
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    Hello Sam , thanks you tell me this, i am also interested in gastric cancer , i  just learn how to analyze the CPTAC data, i download the raw data of the cptac web site and i saw there are some gastric cancer's data i can download. 
    i am very glad to chat with you about bioinformatics and CPTAC data analyze. :>)

                            zihaoxing

                                zihaoxing@stu2019.jnu.edu.cn

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On 5/25/2020 22:39，Sam Payne<notifications@github.com> wrote：

i mean the Korean group that did the gastric cancer paper

—You are receiving this because you authored the thread.Reply to this email directly, view it on GitHub, or unsubscribe.

samuelpayne commented 4 years ago

That data is by a Korean group, affiliated with the International Cancer Proteogenomics Consortium. The CPTAC dcc hosts their data. But our python module current does not.