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PeanutBase / PeanutbaseWebsite

Repo to document and track issues pertaining to PeanutBase website.
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GBrowse Data Source options text: aradu 1.0 and araip 1.0 need strain name #10

Open sdash-github opened 4 years ago

sdash-github commented 4 years ago

As in PB-stage. Currently "Peanutbase - Arachis duranensis 1.0" and "Peanutbase - Arachis duranensis V14167 2.0" Suggesting to add V14167 to 1.0 too to appear as "Peanutbase - Arachis duranensis V14167 1.0" in the dropdown. So that it is immediately apparent which version of which strain among the many choices in the dropdown.

Similarly, "Peanutbase - Arachis ipaensis 1.0" needs K30076 to appear as "Peanutbase - Arachis ipaensis K30076 1.0" ** Please let know if you want @sdash-github to do it.

REMINDER After this is addressed, the JBrowse would need attention too. Here the strain name isn't mentioned at all in the dropdown.

sdash-github commented 4 years ago

Hi Wei, Does this need to be addressed in the PB JBrowse instances now? Here the strain name isn't mentioned at all in the dropdown items.

weihuang12 commented 4 years ago

Genome assembly version 2 of Aradu, Araip and Arahy haven't been placed on Jbrowse yet. I will work on the gnm2s and add strain names to the data source of gnm1.

weihuang12 commented 4 years ago

We don't have any gene annotation available for Aradu and Araip gnm2.

adf-ncgr commented 4 years ago

@weihuang12 please note that there are some issues with the arahy.Tifrunner.gnm2.ann1 gff we're trying to sort out.