Open sdash-github opened 4 years ago
Hi Wei, Does this need to be addressed in the PB JBrowse instances now? Here the strain name isn't mentioned at all in the dropdown items.
Genome assembly version 2 of Aradu, Araip and Arahy haven't been placed on Jbrowse yet. I will work on the gnm2s and add strain names to the data source of gnm1.
We don't have any gene annotation available for Aradu and Araip gnm2.
@weihuang12 please note that there are some issues with the arahy.Tifrunner.gnm2.ann1 gff we're trying to sort out.
As in PB-stage. Currently "Peanutbase - Arachis duranensis 1.0" and "Peanutbase - Arachis duranensis V14167 2.0" Suggesting to add V14167 to 1.0 too to appear as "Peanutbase - Arachis duranensis V14167 1.0" in the dropdown. So that it is immediately apparent which version of which strain among the many choices in the dropdown.
Similarly, "Peanutbase - Arachis ipaensis 1.0" needs K30076 to appear as "Peanutbase - Arachis ipaensis K30076 1.0" ** Please let know if you want @sdash-github to do it.
REMINDER After this is addressed, the JBrowse would need attention too. Here the strain name isn't mentioned at all in the dropdown.