Closed sdash-github closed 2 years ago
OK, I've added the three existing diversity sets for hypogaea:
to the jbrowse2 config for both the aradu.gnm1 and araip.gnm1 against which the variants in those files are located. As is typical, I also discovered that the compression for these genomes/annotations was not bgzip, so have fixed those. In case we ever need to recreate these following an autogenerate of the config by Connor's scripts, the commands I used to add these tracks to the configs are in my home dir on the dev-pb-jekyll VM: ~adf/jbrowse2_config_cmds
-- Add a few variant data: Add manually the genotyping dataset tracks to JB2 config since Connor's script can't pick it up.