PeanutBase / jekyll-peanutbase

A "starter" Jekyll site that uses the jekyll-theme-legumeinfo submodule
Apache License 2.0
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Add a few variant datasets/tracks to JB2 manually #20

Closed sdash-github closed 1 year ago

sdash-github commented 1 year ago

-- Add a few variant data: Add manually the genotyping dataset tracks to JB2 config since Connor's script can't pick it up.

adf-ncgr commented 1 year ago

OK, I've added the three existing diversity sets for hypogaea:

to the jbrowse2 config for both the aradu.gnm1 and araip.gnm1 against which the variants in those files are located. As is typical, I also discovered that the compression for these genomes/annotations was not bgzip, so have fixed those. In case we ever need to recreate these following an autogenerate of the config by Connor's scripts, the commands I used to add these tracks to the configs are in my home dir on the dev-pb-jekyll VM: ~adf/jbrowse2_config_cmds