Viskari
commented
9 years ago A few further details on the issue:
We are trying to install it with the command: ./configure --with-pgconfig=/usr/pgsql-9.4/bin/pg_config --with-projdir=/data/software/proj/4.8.0 --with-jsondir=/data/software/json-c/0.12 --with-gdalconfig=/data/software/gdal/1.11/bin/gdal-config --with-geosconfig=/data/software/geos/3.4.2/bin/geos-config --with-xml2config=/data/software/libxml2/2.9.1/bin/xml2-config --with-gui --with-raster --with-topology
And the paths and flags defined in pgconfig are:
BINDIR = /usr/pgsql-9.4/bin DOCDIR = /usr/share/doc/pgsql HTMLDIR = /usr/share/doc/pgsql INCLUDEDIR = /usr/pgsql-9.4/include PKGINCLUDEDIR = /usr/pgsql-9.4/include INCLUDEDIR-SERVER = /usr/pgsql-9.4/include/server LIBDIR = /usr/pgsql-9.4/lib PKGLIBDIR = /usr/pgsql-9.4/lib LOCALEDIR = /usr/pgsql-9.4/share/locale MANDIR = /usr/pgsql-9.4/share/man SHAREDIR = /usr/pgsql-9.4/share SYSCONFDIR = /etc/sysconfig/pgsql PGXS = /usr/pgsql-9.4/lib/pgxs/src/makefiles/pgxs.mk CONFIGURE = '--disable-rpath' '--prefix=/usr/pgsql-9.4' '--includedir=/usr/pgsql-9.4/include' '--mandir=/usr/pgsql-9.4/share/man' '--datadir=/usr/pgsql-9.4/share' '--with-perl' '--with-python' '--with-tcl' '--with-tclconfig=/usr/lib64' '--with-openssl' '--with-pam' '--with-gssapi' '--with-includes=/usr/include' '--with-libraries=/usr/lib64' '--enable-nls' '--with-uuid=e2fs' '--with-libxml' '--with-libxslt' '--with-ldap' '--with-system-tzdata=/usr/share/zoneinfo' '--sysconfdir=/etc/sysconfig/pgsql' '--docdir=/usr/share/doc' 'CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I/usr/include/et' 'CPPFLAGS= -I/usr/include/et' CC = gcc CPPFLAGS = -I/usr/include/et -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include CFLAGS = -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -I/usr/include/et CFLAGS_SL = -fpic LDFLAGS = -L../../../src/common -L/usr/lib64 -Wl,--as-needed LDFLAGS_EX = LDFLAGS_SL = LIBS = -lpgcommon -lpgport -lxslt -lxml2 -lpam -lssl -lcrypto -lgssapi_krb5 -lz -lreadline -lrt -lcrypt -ldl -lm
dlebauer
We are currently having difficulties getting all the libraries required by PEcAn installed on to our server, with one of the current issues being the postGIS and Raster libraries. Attached is the error message we are getting. Another little oddity in it is that even though we have the newer postgres version 9.4 installed, during installation it continues to refer to the 9.3.5 version. Below is the error log.
Any help would be appreciated.
[Error log]:
It was created by configure, which was generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --with-pgconfig=/usr/pgsql-9.4/bin/pg_config --with-projdir=/data/software/proj/4.8.0 --with-jsondir=/data/software/json-c/0.12 --with-gdalconfig=/data/software/gdal/1.11/bin/gdal-config --with-geosconfig=/data/software/geos/3.4.2/bin/geos-config --with-xml2config=/data/software/libxml2/2.9.1/bin/xml2-config --with-gui --with-raster --with-topology
---------
Platform.
---------
hostname = test uname -m = x86_64 uname -r = 2.6.32-504.8.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Tue Jan 27 13:39:10 CST 2015
/usr/bin/uname -p = unknown /bin/uname -X = unknown
/bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown
PATH: /data/software/proj/4.8.0/bin PATH: /software/mpi/openmpi/1.6.4-gnu48/bin PATH: /software/gcc-4.8.0/include PATH: /software/gcc-4.8.0 PATH: /software/gcc-4.8.0/bin PATH: /data/software/jags/jags-3.4.0/bin PATH: /data/software/laszip/2.2.0/bin PATH: /data/software/src/gdal/gdal-1.11/gdal/swig/python/scripts PATH: /data/software/gdal/1.11/bin PATH: /data/software/netcdf/4.3.3rc2/bin PATH: /data/software/hdf5/1.8.13/bin PATH: /data/software/hdf4/4.2.10/bin PATH: /data/software/geotiff/1.4.1/bin PATH: /data/software/libtiff/4.0.3/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /home0/sserbin/bin
PostGIS is now configured for x86_64-unknown-linux-gnu
-------------- Compiler Info ------------- C compiler: mpicc -g -O2 C++ compiler: mpiCC -g -O2 SQL preprocessor: /software/gcc-4.8.0/bin/cpp -w -traditional-cpp -P
-------------- Dependencies -------------- GEOS config: /data/software/geos/3.4.2/bin/geos-config GEOS version: 3.4.2 GDAL config: /data/software/gdal/1.11/bin/gdal-config GDAL version: 1.11.0 PostgreSQL config: /usr/pgsql-9.4/bin/pg_config PostgreSQL version: PostgreSQL 9.4.0 PROJ4 version: 48 Libxml2 config: /data/software/libxml2/2.9.1/bin/xml2-config Libxml2 version: 2.9.1 JSON-C support: yes PostGIS debug level: 0 Perl: /usr/bin/perl
--------------- Extensions --------------- PostGIS Raster: enabled PostGIS Topology: enabled SFCGAL support: disabled
-------- Documentation Generation -------- xsltproc: /usr/bin/xsltproc xsl style sheets: /usr/share/sgml/docbook/xsl-stylesheets dblatex:
convert: /usr/bin/convert mathml2.dtd: http://www.w3.org/Math/DTD/mathml2/mathml2.dtd
...
make[2]: Entering directory
/data/software/src/postgis/postgis-2.1.5/raster/loader' mpicc -g -O2 -fPIC -DPIC -Wall -Wmissing-prototypes -I../rt_core -I../../liblwgeom -I/data/software/proj/4.8.0/include -I/data/software/gdal/1.11/include -I/data/software/geos/3.4.2/include -c raster2pgsql.c /bin/sh ../../libtool --mode=link mpicc -g -O2 -fPIC -DPIC -Wall -Wmissing-prototypes -I../rt_core -I../../liblwgeom -I/data/software/proj/4.8.0/include -I/data/software/gdal/1.11/include -I/data/software/geos/3.4.2/include ../rt_core/librtcore.a raster2pgsql.o ../../liblwgeom/liblwgeom.la -L/data/software/gdal/1.11/lib -lgdal -L/data/software/geos/3.4.2/lib -lgeos_c -lc -lm -o raster2pgsql libtool: link: mpicc -g -O2 -fPIC -DPIC -Wall -Wmissing-prototypes -I../rt_core -I../../liblwgeom -I/data/software/proj/4.8.0/include -I/data/software/gdal/1.11/include -I/data/software/geos/3.4.2/include raster2pgsql.o -o .libs/raster2pgsql ../rt_core/librtcore.a ../../liblwgeom/.libs/liblwgeom.so -L/data/software/geos/3.4.2/lib -L/data/software/proj/4.8.0/lib -L/data/software/json-c/0.12/lib /data/software/proj/4.8.0/lib/libproj.so /data/software/json-c/0.12/lib/libjson-c.so -L/data/software/gdal/1.11/lib /data/software/gdal/1.11/lib/libgdal.so -L/usr/lib -L/data/software/postgresql/9.3.5/lib -L/data/software/libxml2/2.9.1/lib -lsqlite3 -lodbc -lodbcinst -lexpat -lxerces-c -lnetcdf -lhdf5 -ljpeg -lpng -lpq -lpthread -lrt -lpcre -lcurl /data/software/libxml2/2.9.1/lib/libxml2.so -llzma -lz -ldl /data/software/geos/3.4.2/lib/libgeos_c.so /data/software/geos/3.4.2/lib/libgeos.so -lc -lm -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/data/software/proj/4.8.0/lib -Wl,-rpath -Wl,/data/software/json-c/0.12/lib -Wl,-rpath -Wl,/data/software/gdal/1.11/lib -Wl,-rpath -Wl,/data/software/libxml2/2.9.1/lib -Wl,-rpath -Wl,/data/software/geos/3.4.2/lib /usr/bin/ld: warning: libhdf5.so.8, needed by /data/software/gdal/1.11/lib/libgdal.so, may conflict with libhdf5.so.7 /data/software/gdal/1.11/lib/libgdal.so: undefined reference tonc_inq_var_chunking' /data/software/gdal/1.11/lib/libgdal.so: undefined reference tonc_def_var_chunking' /data/software/gdal/1.11/lib/libgdal.so: undefined reference tonc_def_var_deflate' collect2: error: ld returned 1 exit status make[2]: * [raster2pgsql] Error 1 make[2]: Leaving directory `/data/software/src/postgis/postgis-2.1.5/raster/loader' make[1]: * [rtloader] Error 2 make[1]: Leaving directory`/data/software/src/postgis/postgis-2.1.5/raster' make: *\ [all] Error 1