Open tonygardella opened 6 years ago
To Reproduce
Steps to reproduce the behavior:
Loads Fine once I disabled add-ons in my browser.
How would a user know that they need to disable add-ons in their browser for this app to work? Is there a way to make our app work without requiring users to turn off their browser add-ons? I'm not sure I agree that this issue can be considered fixed at this point
@tonygardella do you know what addon was the one that made it fail? Does it fail for other people?
@tonygardella @tonygardella @mdietze My Shiny apps are working without doing any sort of disabling of add ons, however this app is crashing for other reasons
2018-08-27 09:09:41 INFO [read.output] :
GPP NPP TotalResp AutoResp HeteroResp SoilResp NEE AbvGrndWood
leaf_carbon_content TotLivBiom TotSoilCarb Qle Transp SoilMoist
SoilMoistFrac SWE litter_carbon_content LAI fine_root_carbon_content
coarse_root_carbon_content GWBI AGB Mean: 1.09e-07 5.23e-09 1.51e-07
1.04e-07 4.77e-08 5.34e-08 4.25e-08 13.1 0.149 17.9 16.1 62.2 5.19e-05
75.4 0.628 0.29 0.28 2.44 0.724 3.91 NaN 13.2 Median: 9.26e-10 -1.94e-09
8.57e-08 7.36e-09 3.56e-08 4.09e-08 3.33e-08 12.6 0.00797 16.8 16.5 49.9
3.24e-07 86.6 0.721 0 0.28 0.131 0.318 3.81 NA 12.6
Rbind ensemble output...
Load parameter values...
Get run samples...
Cbind ensemble samples...
Cbind ensemble output and samples...
plotEnsemble x:
plotEnsemble y:
Error in `[.data.frame`(ensemble.out, , x) : undefined columns selected
Error in `[.data.frame`(ensemble.out, , y) : undefined columns selected
Warning: Error in parse: <text>:2:0: unexpected end of input
1: ~
^
169: parse
166: formula.character
164: plotEnsemble
163: renderPlot [/data/software/pecan_dev/shiny/global-sensitivity/server.R#72]
161: func
121: drawPlot
107: <reactive:plotObj>
91: drawReactive
78: origRenderFunc
77: output$ensemble_plot
1: runApp
Ensemble out names: GPP, NPP, TotalResp, AutoResp, HeteroResp, SoilResp, NEE, AbvGrndWood, leaf_carbon_content, TotLivBiom, TotSoilCarb, Qle, Transp, SoilMoist, SoilMoistFrac, SWE, litter_carbon_content, LAI, fine_root_carbon_content, coarse_root_carbon_content, GWBI, AGB, runid, temperate.deciduous.ALL.growth_resp_factor, temperate.deciduous.ALL.root_respiration_rate, temperate.deciduous.ALL.root_turnover_rate, temperate.deciduous.ALL.SLA, temperate.deciduous.ALL.Amax, temperate.deciduous.ALL.leafC, temperate.deciduous.ALL.leaf_respiration_rate_m2, temperate.deciduous.ALL.psnTOpt, temperate.deciduous.ALL.stem_respiration_rate, temperate.deciduous.ALL.extinction_coefficient, temperate.deciduous.ALL.half_saturation_PAR, temperate.deciduous.ALL.dVPDSlope, temperate.deciduous.ALL.dVpdExp, temperate.deciduous.ALL.veg_respiration_Q10, temperate.deciduous.ALL.fine_root_respiration_Q10, temperate.deciduous.ALL.coarse_root_respiration_Q10, temperate.deciduous.ALL.fracLeafFall, temperate.deciduous.ALL.leafGrowth, temperate.deciduous.ALL.leaf_allocation_fraction, temperate.deciduous.ALL.root_allocation_fraction, temperate.deciduous.ALL.Vm_low_temp, temperate.deciduous.ALL.AmaxFrac, temperate.deciduous.ALL.wood_allocation_fraction, temperate.deciduous.ALL.leaf_turnover_rate, temperate.deciduous.ALL.wood_turnover_rate
fitSummary x:
fitSummary y:
Warning: Error in parse: <text>:2:0: unexpected end of input
1: ~
^
115: parse
112: formula.character
110: fitSummary
109: <reactive:lm_fit> [/data/software/pecan_dev/shiny/global-sensitivity/server.R#83]
93: lm_fit
92: renderTable
91: func
78: origRenderFunc
77: output$coef_table
1: runApp
Warning: Error in parse: <text>:2:0: unexpected end of input
1: ~
^
96: <Anonymous>
plotEnsemble x: temperate.deciduous.ALL.growth_resp_factor
plotEnsemble y: GPP
Ensemble out names: GPP, NPP, TotalResp, AutoResp, HeteroResp, SoilResp, NEE, AbvGrndWood, leaf_carbon_content, TotLivBiom, TotSoilCarb, Qle, Transp, SoilMoist, SoilMoistFrac, SWE, litter_carbon_content, LAI, fine_root_carbon_content, coarse_root_carbon_content, GWBI, AGB, runid, temperate.deciduous.ALL.growth_resp_factor, temperate.deciduous.ALL.root_respiration_rate, temperate.deciduous.ALL.root_turnover_rate, temperate.deciduous.ALL.SLA, temperate.deciduous.ALL.Amax, temperate.deciduous.ALL.leafC, temperate.deciduous.ALL.leaf_respiration_rate_m2, temperate.deciduous.ALL.psnTOpt, temperate.deciduous.ALL.stem_respiration_rate, temperate.deciduous.ALL.extinction_coefficient, temperate.deciduous.ALL.half_saturation_PAR, temperate.deciduous.ALL.dVPDSlope, temperate.deciduous.ALL.dVpdExp, temperate.deciduous.ALL.veg_respiration_Q10, temperate.deciduous.ALL.fine_root_respiration_Q10, temperate.deciduous.ALL.coarse_root_respiration_Q10, temperate.deciduous.ALL.fracLeafFall, temperate.deciduous.ALL.leafGrowth, temperate.deciduous.ALL.leaf_allocation_fraction, temperate.deciduous.ALL.root_allocation_fraction, temperate.deciduous.ALL.Vm_low_temp, temperate.deciduous.ALL.AmaxFrac, temperate.deciduous.ALL.wood_allocation_fraction, temperate.deciduous.ALL.leaf_turnover_rate, temperate.deciduous.ALL.wood_turnover_rate
fitSummary x: temperate.deciduous.ALL.growth_resp_factor
fitSummary y: GPP
I take that back, I am getting those errors BUT the app is running and generating the plots.
For example
One request I would make for this app is to not automatically load the last workflow ID when loading the app but instead ask which workflow to load before loading any outputs. Auto loading is bad if the last workflow ID in the list crashed. @tonygardella
That said, with MAAT I am getting these errors?
Warning: Error in eval: object 'GPP' not found
118: eval
117: eval
116: model.frame.default
111: fitSummary
110: <reactive:lm_fit> [/data/software/pecan_dev/shiny/global-sensitivity/server.R#83]
94: lm_fit
92: renderText [/data/software/pecan_dev/shiny/global-sensitivity/server.R#89]
91: func
78: origRenderFunc
77: output$r2
1: runApp
Warning: Error in eval: object 'GPP' not found
95: <Anonymous>
plotEnsemble x: temperate.deciduous.leaf_respiration_Q10
plotEnsemble y: leaf_respiration
Error in `[.data.frame`(ensemble.out, , y) : undefined columns selected
Warning: Error in eval: object 'leaf_respiration' not found
172: eval
171: eval
170: <Anonymous>
164: plotEnsemble
163: renderPlot [/data/software/pecan_dev/shiny/global-sensitivity/server.R#72]
161: func
121: drawPlot
107: <reactive:plotObj>
91: drawReactive
78: origRenderFunc
77: output$ensemble_plot
1: runApp
Ensemble out names: Simulation.Year, Fraction.of.Julian.Date, Gross.Primary.Productivity, Leaf.Respiration.Rate, Leaf.Stomatal.Conductance, Leaf.Internal.CO2.Concentration, Leaf.Mesophyll.CO2.Concentration, runid, temperate.deciduous.leaf_reflect_vis, temperate.deciduous.Hd_Modified_Arrhenius_Vcmax, temperate.deciduous.Ha_Modified_Arrhenius_Vcmax, temperate.deciduous.leaf_respiration_Q10, temperate.deciduous.f_frac, temperate.deciduous.Hd_Modified_Arrhenius_Jmax, temperate.deciduous.Ha_Modified_Arrhenius_Jmax, temperate.deciduous.theta, temperate.deciduous.leaf_width, temperate.deciduous.leaf_trans_vis, temperate.deciduous.leaf_respiration_rate_m2, temperate.deciduous.Jmax, temperate.deciduous.Vcmax, temperate.deciduous.stomatal_slope.BB
fitSummary x: temperate.deciduous.leaf_respiration_Q10
fitSummary y: leaf_respiration
Warning: Error in eval: object 'leaf_respiration' not found
118: eval
117: eval
116: model.frame.default
111: fitSummary
110: <reactive:lm_fit> [/data/software/pecan_dev/shiny/global-sensitivity/server.R#83]
94: lm_fit
92: renderText [/data/software/pecan_dev/shiny/global-sensitivity/server.R#89]
91: func
78: origRenderFunc
77: output$r2
1: runApp
Warning: Error in eval: object 'leaf_respiration' not found
95: <Anonymous>
despite those showing up as options?
Also seeing this in the log for ED2
AbvGrndWood AutoResp CO2CAS CropYield GPP HeteroResp NEE NPP TotalResp
TotLivBiom TotSoilCarb Fdepth SnowDepth SnowFrac Tdepth CO2air LWdown
Psurf Qair Rainf SWdown Tair Wind LWnet Qg Qh Qle SWnet RootMoist TVeg
WaterTableD fPAR LAI SMFrozFrac SMLiqFrac SoilMoist SoilTemp SoilWet
Albedo SnowT SWE VegT Evap Qs Qsb SoilResp Mean: NaN NaN NaN NaN NaN NaN
NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN
NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN
NaN NaN NaN NaN Median: NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
NA NA NA NA NA NA```
This issue is stale because it has been open 365 days with no activity.