PecanProject / pecan

The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
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Ensemble sampling: PCA + Unscented Transform? #934

Open mdietze opened 8 years ago

mdietze commented 8 years ago

Two observations suggesting that we need an uncertainty propagation option that's much faster than Monte Carlo:

Therefore, we want an option for ensemble error propagation that uses the minimum number of possible ensemble members but gives a better approximation than a small random sample.

Two interrelated ideas for how to achieve this:

  1. Reduce the dimensionality of parameter space by performing a PCA on the joint posterior probability distribution. Do this having transformed parameter space through the sensitivity functions (so that output variability reflects parameter importance). Truncate to the top N eigenvectors which explain some threshold value of variability.
  2. Rather than sampling the PCA'ed posterior randomly, choose 2*N + 1 ensemble members systematically (e.g. using the Unscented Transform), run the model for these points, and then back-transform to the output mean and variance analytically rather than estimating summary statistics (mean, median, SD, quantiles) from the sample
github-actions[bot] commented 3 years ago

This issue is stale because it has been open 365 days with no activity.