Closed logstar closed 1 year ago
@taylordm EFO IDs are removed from the y-axis texts of one-ENSG all-cancer heatmaps in commit https://github.com/PediatricOpenTargets/OpenPedCan-api/commit/a3267e086933655687786f2d9ee2bec6c72a763f. Following is an example of the updated one-ENSG all-cancer heatmap:
@taylordm @chinwallaa @afarrel - I will change Specimen = Primary Tumor
to Specimen = Pediatric Primary Tumor
in row labels, to be consistent with the TPM boxplots.
I will also change legend log2FC
to log2 expression fold change
.
Let me know if you have any questions or suggestions.
I will also change "Pediatric" in one-ENSG differential gene expression (DGE) heatmap titles to "pediatric".
Example one-ENSG DGE heatmap with "Pediatric" in title:
@taylordm @afarrel @chinwallaa -
I will change legend title to log2 gene expression fold change
to be consistent with heatmap titles.
I will also change one-EFO DGE heatmap title to:
Top upregulated (or downregulated, or differentially expressed) [PMTL] genes in pediatric {Disease/cancer_group} primary tumors comparing to GTEx normal adult tissues
Let me know if you have any questions or suggestions.
Following are two example DGE heatmaps with all changes described above implemented.
@taylordm @chinwallaa @afarrel -
As discussed in the meeting on 01/19/2021:
Following are updated DGE heatmaps:
@taylordm @chinwallaa @afarrel - I will move the column labels to the bottom, to emphasize the title and make the column labels look less cluttered.
Following are examples of updated heatmaps:
Differential gene expression heatmap has multiple texts for describing the content. This issue intends to iterate on the texts to make them more accurate and informative.
As suggested by @taylordm at https://opentargetspediatrics.slack.com/archives/C029HNYH1JQ/p1642179964001300, EFO IDs will be removed from the y axis labels of one-ENSG all-cancer heatmaps.
If there is any other comments or suggestions, feel free to post them here or let me know.
cc @chinwallaa @afarrel