PediatricOpenTargets / OpenPedCan-api

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Add TCGA RNA-seq samples to TPM boxplots #72

Closed logstar closed 1 year ago

logstar commented 2 years ago

Add TCGA RNA-seq samples in OpenPedCan-analysis data release to TPM boxplots. TCGA RNA-seq sample TPM values are in tcga-gene-expression-rsem-tpm-collapsed.rds, and the sample metadata are in histologies.tsv.

The following design issues have been resolved, but they are still open to suggestions, according to discussions with @jharenza and @chinwallaa in https://opentargetspediatrics.slack.com/archives/C03AR8ZD0RF:

cc @taylordm