PyBids error

[araikes]

I pulled the latest version of bidsonym today. I went to run it and get the following error:

scanlab@hope:/data/reading$ docker run -i --rm -v $bidsdir:/bids_dataset peerherholz/bidsonym:latest /bids_dataset participant --deid pydeface --del_nodeface no_del --participant_label RS001
Traceback (most recent call last):
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 583, in _build_master
    ws.require(__requires__)
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 900, in require
    needed = self.resolve(parse_requirements(requirements))
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 791, in resolve
    raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (pybids 0.10.0 (/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages), Requirement.parse('pybids~=0.9.2'), {'templateflow'})

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/miniconda-latest/envs/bidsonym/bin/bidsonym", line 6, in <module>
    from pkg_resources import load_entry_point
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3251, in <module>
    @_call_aside
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3235, in _call_aside
    f(*args, **kwargs)
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 3264, in _initialize_master_working_set
    working_set = WorkingSet._build_master()
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 585, in _build_master
    return cls._build_from_requirements(__requires__)
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 598, in _build_from_requirements
    dists = ws.resolve(reqs, Environment())
  File "/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages/pkg_resources/__init__.py", line 791, in resolve
    raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (pybids 0.10.0 (/opt/miniconda-latest/envs/bidsonym/lib/python3.6/site-packages), Requirement.parse('pybids~=0.9.2'), {'templateflow'})

I tried unsetting my PYTHONPATH just to make sure there was no conflict and get the same.

[PeerHerholz]

Hi @araikes,

thank you very much for your interested in BIDSonym and posting this problem. I just pushed some changes to the environment related files and it should work now. The automated build should be done in the next few hours. Could you please try that version as soon as it's up?

[araikes]

I pulled it this morning. Same error.

[PeerHerholz]

Hi @araikes,

I'm truly sorry for the inconvenience. I changed a few other things related to function imports and tested a local build which it worked as expected. I pushed the respective changes and the automated build should be finished soon-ish. Could you please try that version again?

[araikes]

Hi @PeerHerholz, Sorry for the long lag. Christmas and grant reports got in the way. The new version up worked.

Thanks

[PeerHerholz]

No biggie.

Coolio, I will close this issue then.