Add -w | --work-dir option (and do not use temporary folder)?

PeerHerholz / BIDSonym

a BIDS app for pseudo-anonymization of neuroimaging data

https://peerherholz.github.io/BIDSonym/

BSD 3-Clause "New" or "Revised" License

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Add -w | --work-dir option (and do not use temporary folder)? #82

Open yarikoptic opened 2 months ago

yarikoptic commented 2 months ago

fmriprep and mriqc have

  -w WORK_DIR, --work-dir WORK_DIR
                        Path where intermediate results should be stored
                        (default: /home/yoh/proj/repronim/containers/work)

ie defaulting to $PWD/work . It might be annoying but allows for faster reruns in case of crashes. BIDSonym seems to use temporary folder so reruns are independent