Closed jankaWIS closed 2 years ago
Speaking of 404, your link to opening an issue is wrong, you are missing an s
at the end.
https://github.com/PeerHerholz/workshop_weizmann/issues
Now it returns another 404..
Ahoi hoi @jankaWIS,
thx so much for spotting these problems! They should be fixed now. There might be a few more of these as I'm still preparing/finishing some sections of the workshop. Sorry for that.
Cheers, Peer
One more thing regarding the same file (didn't want to open another issue), FYI on my machine, using:
conda install nibabel
results in
PackagesNotFoundError: The following packages are not available from current channels:
- nibabel
The same goes for nilearn. Probably you want to recommend something like (source):
conda install -c conda-forge nilearn
or pip:
pip install -U --user nilearn
And one more note, nibabel
is a dependency for nilearn
so one can only install the latter.
Hi @jankaWIS,
thx for bringing this up. Would you mind sharing which installation instructions you follow? I'm asking because the setup section specifically mentions the command
conda config --append channels conda-forge
during the python
section of the os-specific installation instructions.
The once it gives you once you run the sh file we talked about before :), this: https://raw.githubusercontent.com/PeerHerholz/workshop_weizmann/master/check_install.sh
If you run it, it tells you how to install what is missing.
# check python packages
for package in ${packages[@]}; do
python -c "import ${package}" 2> /dev/null || {
package=$( echo "${package}" | tr '[:upper:]' '[:lower:]' )
printf "Missing Python package: "
printf "install with $ conda install ${package}\n"
missing=true
}
done
Ah, I see, you have there the command for conda to set it up as a default... I already had conda before so I skipped this part.
Hi @jankaWIS,
ah yes. I added a short primer for such cases in the setup instructions but it might be worth further specifying it.
Hi Peer,
I'm coming to your workshop at Weizmann in 10 days. I was checking your instructions and just wanted to let you know that your page for checking installation doesn't exist.
curl -s https://raw.githubusercontent.com/PeerHerholz/workshop_weizmann/master/check_ins
returns 404.