Open elenaaggiusvella opened 2 years ago
Ahoi hoi Elena,
no biggie at all, I'm sorry to hear you're having problems with the installation process. However, no worries, we'll try our best to make it work on your end!
Elena@Elena-DELL MINGW64 /c/Program Files/Docker Toolbox $ bash <( curl -s https://raw.githubusercontent.com/PeerHerholz/workshop_weizma nn/main/check_install.sh) Missing software program: conda. Check installation instructions Missing Python package: install with $ conda install flake8 Missing Python package: install with $ conda install ipython Missing Python package: install with $ conda install jupyter Missing Python package: install with $ conda install jupyterlab Missing Python package: install with $ conda install nibabel Missing Python package: install with $ conda install nilearn Missing Python package: install with $ conda install pandas Missing Python package: install with $ conda install seaborn
As might have already guessed, this tells you that there are some
python modules
missing within your python environment
. Could you please check the steps outlined in the [setup instructions]() again to verify that you ran all necessary commands? Chances are you are missed the following lines:
conda config --append channels conda-forge
conda config --set channel_priority strict
conda install -y flake8 ipython jupyter jupyterlab matplotlib nibabel nilearn numpy pandas scipy seaborn
Could you try to run these lines and check if it resolves the issue?
> Elena@Elena-DELL MINGW64 /c/Program Files/Docker Toolbox
> $ docker run -p 8888:8888 -it --rm peerherholz/workshop_weizmann
> C:\Program Files\Docker Toolbox\docker.exe: Error response from daemon: driver failed programming external connectivity on endpoint confident_lumiere (0c65a2b171446688825dcb7cb9dd0ecb366740d9cbb2dacf10341c8bc6368fde): Bind for 0.0.0.0:8888 failed: port is already allocated.
The problem here appears to be that the port you trying to run the jupyter notebook server
from (i.e. 8888
) is already allocated, that is already in use by another application, maybe another jupyter notebook server
. Could you maybe check that no other respective processes are running? Regarding the jupyter notebook server
, you could run the following command to be sure:
jupyter notebook list
HTH. Please let me know if you still have problems with the installation.
Cheers, Peer
thank you a lot for your email :-) I m trying to check all and run the lines u sent in ubuntu (it s downloading a lot of stuff). However, after to have restart my pc, the error disappeared but docker didn t open any Jupyter :-(
Can you pls tell me how ubuntu and docker interact? when you say terminal you mean ubuntu right? i m not familiar with them but very happy to learn new stuff and softwares thx a lot elena
i think my probl is at this stage when i run the docker run hello world, it goes to search in another directory
thx for any help and sorry elena
Hi @elenaaggiusvella,
thx for the updates and sorry we're still not quite there but I think we almost did it.
However, after to have restart my pc, the error disappeared but docker didn t open any Jupyter :-(
Yeah, depending on the way things are set up, the jupyter notebook server
will start but not automatically open a browser/a new tab in a browser. To get to the content, you can either press crtl & the click the http://127.0.0.1:8888/?token...
link you see in your terminal or copy/paste the following address in your browser http://127.0.0.1:8888/?token=workshop_weizmann
.
Can you pls tell me how ubuntu and docker interact?
TL;DR: Docker is a form of kernel/OS-level virtualization meaning that you have entire OS
in rather small self-contained units, here called containers
. This means that you can run multiple guest OS
(e.g. multiple ubuntu
versions with different software packages installed) from the same guest OS
(e.g. windows
like in your case, macOS
or linux
). We really like to use docker images
for our workshops because we can provide folks with a working computing environment with all software necessary for the workshop ready to go. That's especially important for windows
users as a lot of software won't run on their systems natively.
when you say terminal you mean ubuntu right?
IIRC both docker toolbox terminal
and WSL/ubuntu terminal
should work.
i think my probl is at this stage
I saw the same problem from a different participant. Could you maybe run WSL/ubuntu
as a "standard user" and not as "root/admin" and try again?
HTH. Please let me know if this won't solve the errors. Sorry again.
Cheers, Peer
Dear Peer Herholz, Thx so much for your fast support (i m sorry i m in the middle of transfer between houses, so i ' m trying to do my best to be ready for the course but it was a very busy time). Pls not ask sorry, I should say it :-P. I ctrl and clicked on the link but the page was not found. [image: image.png] I'm going to try to follow the instructions you sent and see if I can solve the problem. Otherwise, is there the possibility to zoom with someone / give remote access to my pc so I can be ready for tomorrow? thank a lot and sorry again elena
Il giorno sab 23 ott 2021 alle ore 10:18 Peer Herholz < @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
thx for the updates and sorry we're still not quite there but I think we almost did it.
However, after to have restart my pc, the error disappeared but docker didn t open any Jupyter :-(
Yeah, depending on the way things are set up, the jupyter notebook server will start but not automatically open a browser/a new tab in a browser. To get to the content, you can either press crtl & the click the http://127.0.0.1:8888/?token... link you see in your terminal or copy/paste the following address in your browser http://127.0.0.1:8888/?token=workshop_weizmann.
Can you pls tell me how ubuntu and docker interact?
TL;DR: Docker https://en.wikipedia.org/wiki/Docker_(software) is a form of kernel/OS-level virtualization https://en.wikipedia.org/wiki/OS-level_virtualization meaning that you have entire OS in rather small self-contained units, here called containers. This means that you can run multiple guest OS (e.g. multiple ubuntu versions with different software packages installed) from the same guest OS (e.g. windows like in your case, macOS or linux). We really like to use docker images for our workshops because we can provide folks with a working computing environment with all software necessary for the workshop ready to go. That's especially important for windows users as a lot of software won't run on their systems natively.
when you say terminal you mean ubuntu right?
IIRC both docker toolbox terminal and WSL/ubuntu terminal should work.
i think my probl is at this stage
I saw the same problem from a different participant. Could you maybe run WSL/ubuntu as a "standard user" and not as "root/admin" and try again?
HTH. Please let me know if this won't solve the errors. Sorry again.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950115676, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VF3MD5EMRY3M7FPVYDUIJVVNANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
forgot I usually run ubuntu as normal user and not administrator...i just opened it with doubled click
Il giorno sab 23 ott 2021 alle ore 15:43 Elena Aggius-Vella < @.***> ha scritto:
Dear Peer Herholz, Thx so much for your fast support (i m sorry i m in the middle of transfer between houses, so i ' m trying to do my best to be ready for the course but it was a very busy time). Pls not ask sorry, I should say it :-P. I ctrl and clicked on the link but the page was not found. [image: image.png] I'm going to try to follow the instructions you sent and see if I can solve the problem. Otherwise, is there the possibility to zoom with someone / give remote access to my pc so I can be ready for tomorrow? thank a lot and sorry again elena
Il giorno sab 23 ott 2021 alle ore 10:18 Peer Herholz < @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
thx for the updates and sorry we're still not quite there but I think we almost did it.
However, after to have restart my pc, the error disappeared but docker didn t open any Jupyter :-(
Yeah, depending on the way things are set up, the jupyter notebook server will start but not automatically open a browser/a new tab in a browser. To get to the content, you can either press crtl & the click the http://127.0.0.1:8888/?token... link you see in your terminal or copy/paste the following address in your browser http://127.0.0.1:8888/?token=workshop_weizmann.
Can you pls tell me how ubuntu and docker interact?
TL;DR: Docker https://en.wikipedia.org/wiki/Docker_(software) is a form of kernel/OS-level virtualization https://en.wikipedia.org/wiki/OS-level_virtualization meaning that you have entire OS in rather small self-contained units, here called containers. This means that you can run multiple guest OS (e.g. multiple ubuntu versions with different software packages installed) from the same guest OS (e.g. windows like in your case, macOS or linux). We really like to use docker images for our workshops because we can provide folks with a working computing environment with all software necessary for the workshop ready to go. That's especially important for windows users as a lot of software won't run on their systems natively.
when you say terminal you mean ubuntu right?
IIRC both docker toolbox terminal and WSL/ubuntu terminal should work.
i think my probl is at this stage
I saw the same problem from a different participant. Could you maybe run WSL/ubuntu as a "standard user" and not as "root/admin" and try again?
HTH. Please let me know if this won't solve the errors. Sorry again.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950115676, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VF3MD5EMRY3M7FPVYDUIJVVNANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
Hi @elenaaggiusvella,
sorry if I missed it but is the Docker container
running now?
I'm asking because
I ctrl and clicked on the link but the page was not found.
would mean that it runs somewhere. Based on your previous messages
it seems that Docker
is only running in the Docker toolbox terminal
but not WSL
.
Did you run step 10
in the Docker setup instructions:
echo "export DOCKER_HOST=tcp://xxx.xxx.xx.xxx:xxxx" >> $HOME/.bashrc
echo "export DOCKER_CERT_PATH=/mnt/c/Users/<YOUR_USERNAME>/.docker/machine/certs" >> $HOME/.bashrc
echo "export DOCKER_TLS_VERIFY=1" >> $HOME/.bashrc
where you should replace the x
s according to the setup instructions?
Also, regarding the
I ctrl and clicked on the link but the page was not found.
problem you could try to replace the generated link http://127.0.0.1:8888/?token=workshop_weizmann
with http://192.168.99.100:8888/?token=workshop_weizmann
and check if that works.
IIRC there will be a brief install office hour roughly 30 min before the workshop.
HTH. Cheers, Peer
thx a lot for your email I rua the
echo "export DOCKER_HOST=tcp://xxx.xxx.xx.xxx:xxxx" >> $HOME/.bashrc
echo "export DOCKER_CERT_PATH=/mnt/c/Users/
$HOME/.bashrc echo "export DOCKER_TLS_VERIFY=1" >> $HOME/.bashrc
in ubuntu... I must run them in docker?
i see now that when i open ubuntu it appears the following lines
[image: image.png]
i reran the line changing my user name with the previous output, but it remains like that.
Anyway, I will try to run the echo lines in docker, if not success i will connect tmw earlier, the support is at the same link of the course?
thx thx
elena
Il giorno sab 23 ott 2021 alle ore 16:22 Peer Herholz < @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
sorry if I missed it but is the Docker container running now? I'm asking because
I ctrl and clicked on the link but the page was not found.
would mean that it runs somewhere. Based on your previous messages it seems that Docker is only running in the Docker toolbox terminal but not WSL. Did you run step 10 in the Docker setup instructions https://peerherholz.github.io/workshop_weizmann/setup.html#os-specific-installation-instructions :
echo "export DOCKER_HOST=tcp://xxx.xxx.xx.xxx:xxxx" >> $HOME/.bashrc echo "export DOCKER_CERT_PATH=/mnt/c/Users/
/.docker/machine/certs" >> $HOME/.bashrc echo "export DOCKER_TLS_VERIFY=1" >> $HOME/.bashrc where you should replace the xs according to the setup instructions?
Also, regarding the
I ctrl and clicked on the link but the page was not found.
problem you could try to replace the generated link http://127.0.0.1:8888/?token=workshop_weizmann with http://192.168.99.100:8888/?token=workshop_weizmann and check if that works.
IIRC there will be a brief install office hour roughly 30 min before the workshop.
HTH. Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950160109, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VEQGNFOQMGO6M7AZUDUILAKVANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
Hi @elenaaggiusvella,
could you perhaps add the screenshots in a different way? They unfortunately don't show up in your post.
The following lines should be run for example in the WSL (ubuntu) terminal
:
echo "export DOCKER_HOST=tcp://xxx.xxx.xx.xxx:xxxx" >> $HOME/.bashrc
echo "export DOCKER_CERT_PATH=/mnt/c/Users/<YOUR_USERNAME>/.docker/machine/certs" >> $HOME/.bashrc
echo "export DOCKER_TLS_VERIFY=1" >> $HOME/.bashrc
Just to be sure: please make sure you adapted all necessary information, including
tcp://xxx.xxx.xx.xxx:xxxx
and
<YOUR_USERNAME>
.
For these things (and many other changes) to take effect, it's required to close and re-open the terminal
.
Did you try the following regarding the site not found
error?
problem you could try to replace the generated link http://127.0.0.1:8888/?token=workshop_weizmann with http://192.168.99.100:8888/?token=workshop_weizmann and check if that works.
HTH. Cheers, Peer
sorry I see that if i reply by email it dosen t show the screeshot
Did you try the following regarding the site not found error?
problem you could try to replace the generated link http://127.0.0.1:8888/?token=workshop_weizmann with http://192.168.99.100:8888/?token=workshop_weizmann and check if that works.
I clicked on both link plus ctrl and this is the output (sorry, it s not no found)
Just to be sure: please make sure you adapted all necessary information, including
i adapted the line by inserting the number in the xxx I replaced Users with utenti (my pc is in italian... i tried also to leave Users, and instead of my username i put User (the folder is not called with my name). i run them in ubuntu, close and reopen ubuntu but when i try to run hello world in ubuntu, it gives me an error (it dosen t find the path).
Now when i open ubuntu, i see these lines
really sorry for the last minute mess thx a lot elena
Hi @elenaaggiusvella,
I think at this point it would be better to try to solve this problem during the installation office hour before the workshop. Sorry for that.
Cheers, Peer
ok, sorry for that, the link for the support is the same of the conference_? the path exists because i can see the file in the folder but ubuntudosen t find them
I m embarassed, i think i m making a mess, as before hello world in docker worked and now no sorry for all the troubled. I can try to rerun from beginning the setup. if i have all already installed, it will not download again right? sorry again elena
i download again docker toolbox and try :-)
Hi @elenaaggiusvella
yeah the link should be the same as far as I know. Ok, cool. Please let me know how things are going.
Cheers, Peer
thx i start from 0, i hope to not distroit my pc :-/
so the starting error seems to happen when i try to install docker depencencies from ubuntu
Hi @elenaaggiusvella,
just to confirm: this is step 6 of the docker
install instructions, right?
# Update the apt package list.
sudo apt-get update -y
# Install Docker's package dependencies.
sudo apt-get install -y \
apt-transport-https \
ca-certificates \
curl \
software-properties-common
# Download and add Docker's official public PGP key.
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add -
# Verify the fingerprint.
sudo apt-key fingerprint 0EBFCD88
# Add the `stable` channel's Docker upstream repository.
sudo add-apt-repository \
"deb [arch=amd64] https://download.docker.com/linux/ubuntu \
$(lsb_release -cs) \
stable"
# Update the apt package list (for the new apt repo).
sudo apt-get update -y
# Install the latest version of Docker CE.
sudo apt-get install -y docker-ce
# Allow your user to access the Docker CLI without needing root access.
sudo usermod -aG docker $USER
Did you copy-paste the entire field/all lines of code or did you copy-paste and run line-by-line? In case you did the first, please try again going through line-by-line.
HTH. Cheers, Peer
i did line by line :-) Now i reinstalled docker again, but as soon as i open it it says ![image](https://user-images.githubusercontent.com/62656212/138565995-9cd0a5a5-443f-407a-8f67-066c1a2dbea9.pn
i have also reinstalled ubuntu and i got this
sorry again, if i not suceed today, i ll be online tmw from 9 israeli time or earlier if needed thx elena
The problem is with docker, it dosen t find it self at the beginning when running hello world. I ll be in zoom early tmw and hope to find the solution with help Thx for the time Elena
Il Sab 23 Ott 2021, 19:05 Peer Herholz @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
just to confirm: this is step 6 of the docker install instructions, right?
Update the apt package list.
sudo apt-get update -y
Install Docker's package dependencies.
sudo apt-get install -y \ apt-transport-https \ ca-certificates \ curl \ software-properties-common
Download and add Docker's official public PGP key.
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo apt-key add -
Verify the fingerprint.
sudo apt-key fingerprint 0EBFCD88
Add the
stable
channel's Docker upstream repository.sudo add-apt-repository \ "deb [arch=amd64] https://download.docker.com/linux/ubuntu \ $(lsb_release -cs) \ stable"
Update the apt package list (for the new apt repo).
sudo apt-get update -y
Install the latest version of Docker CE.
sudo apt-get install -y docker-ce
Allow your user to access the Docker CLI without needing root access.
sudo usermod -aG docker $USER
Did you copy-paste the entire field/all lines of code or did you copy-paste and run line-by-line? In case you did the first, please try again going through line-by-line.
HTH. Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950181942, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VHMPMRUPAMTGEAM5RTUILTNFANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
Hi @elenaaggiusvella,
yeah, it might be best if we meet before the workshop and see if we can figure this out together. Sorry again.
Cheers, Peer
Thx a lot!!! I ll be online from israeli 9( 1h before the meeting) Thx again and sorry Elena
Il Sab 23 Ott 2021, 20:33 Peer Herholz @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
yeah, it might be best if we meet before the workshop and see if we can figure this out together. Sorry again.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950194190, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VEPFH5FIKVLXSPDLYLUIL5XFANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
Good morning i m online :-) pls if u don t see me, let me know thx elena
Il giorno sab 23 ott 2021 alle ore 20:39 Elena Aggius-Vella < @.***> ha scritto:
Thx a lot!!! I ll be online from israeli 9( 1h before the meeting) Thx again and sorry Elena
Il Sab 23 Ott 2021, 20:33 Peer Herholz @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
yeah, it might be best if we meet before the workshop and see if we can figure this out together. Sorry again.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950194190, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VEPFH5FIKVLXSPDLYLUIL5XFANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
I could pay for the extra help before next class
Il giorno dom 24 ott 2021 alle ore 07:41 Elena Aggius-Vella < @.***> ha scritto:
Good morning i m online :-) pls if u don t see me, let me know thx elena
Il giorno sab 23 ott 2021 alle ore 20:39 Elena Aggius-Vella < @.***> ha scritto:
Thx a lot!!! I ll be online from israeli 9( 1h before the meeting) Thx again and sorry Elena
Il Sab 23 Ott 2021, 20:33 Peer Herholz @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
yeah, it might be best if we meet before the workshop and see if we can figure this out together. Sorry again.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950194190, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VEPFH5FIKVLXSPDLYLUIL5XFANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
Hi @elenaaggiusvella,
all good, no need for that. Yeah, let's meet before the next workshop to sort this out. Sorry, you're having so many problems with the installation.
Cheers, Peer
really thank you Peer, It's my fault but I come back to italy 2 weeks ago for medical stuff, i spent some days in hospital and after i had to prepare stuff to move to a new house. I should have started setting it before..but i was not able to find the time. Really appreciate i m always available, pls tell me when it works better for u very happy to learn more best elena
Il giorno dom 24 ott 2021 alle ore 11:07 Peer Herholz < @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
all good, no need for that. Yeah, let's meet before the next workshop to sort this out. Sorry, you're having so many problems with the installation.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950288440, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VDP4N2QLLOPK3ANR3TUIPEGZANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
It's so cool what you showed that I must be able to use it :-) what about tuesday? I tried true anaconda and Jupiter but nothing :-( thx thx elena
Il giorno dom 24 ott 2021 alle ore 11:19 Elena Aggius-Vella < @.***> ha scritto:
really thank you Peer, It's my fault but I come back to italy 2 weeks ago for medical stuff, i spent some days in hospital and after i had to prepare stuff to move to a new house. I should have started setting it before..but i was not able to find the time. Really appreciate i m always available, pls tell me when it works better for u very happy to learn more best elena
Il giorno dom 24 ott 2021 alle ore 11:07 Peer Herholz < @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
all good, no need for that. Yeah, let's meet before the next workshop to sort this out. Sorry, you're having so many problems with the installation.
Cheers, Peer
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/PeerHerholz/workshop_weizmann/issues/2#issuecomment-950288440, or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6A5VDP4N2QLLOPK3ANR3TUIPEGZANCNFSM5GQKNXTQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.
Hi sorry to disturb u again Is it ok to meet tomorrow? thank you a lot elena
Il giorno dom 24 ott 2021 alle ore 13:43 Elena Aggius-Vella < @.***> ha scritto:
It's so cool what you showed that I must be able to use it :-) what about tuesday? I tried true anaconda and Jupiter but nothing :-( thx thx elena
Il giorno dom 24 ott 2021 alle ore 11:19 Elena Aggius-Vella < @.***> ha scritto:
really thank you Peer, It's my fault but I come back to italy 2 weeks ago for medical stuff, i spent some days in hospital and after i had to prepare stuff to move to a new house. I should have started setting it before..but i was not able to find the time. Really appreciate i m always available, pls tell me when it works better for u very happy to learn more best elena
Il giorno dom 24 ott 2021 alle ore 11:07 Peer Herholz < @.***> ha scritto:
Hi @elenaaggiusvella https://github.com/elenaaggiusvella,
all good, no need for that. Yeah, let's meet before the next workshop to sort this out. Sorry, you're having so many problems with the installation.
Cheers, Peer
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Dear Peer Herholz
Sorry to disturb I have an issue in setting the softwares for the workshop It seems everything works until i ask docker to open jupyter.
I receive the following text and nothing is opened could you give me some suggestion? thx elena
Elena@Elena-DELL MINGW64 /c/Program Files/Docker Toolbox $ bash <( curl -s https://raw.githubusercontent.com/PeerHerholz/workshop_weizma nn/main/check_install.sh) Missing software program: conda. Check installation instructions Missing Python package: install with $ conda install flake8 Missing Python package: install with $ conda install ipython Missing Python package: install with $ conda install jupyter Missing Python package: install with $ conda install jupyterlab Missing Python package: install with $ conda install nibabel Missing Python package: install with $ conda install nilearn Missing Python package: install with $ conda install pandas Missing Python package: install with $ conda install seaborn
Elena@Elena-DELL MINGW64 /c/Program Files/Docker Toolbox $ docker run -p 8888:8888 -it --rm peerherholz/workshop_weizmann C:\Program Files\Docker Toolbox\docker.exe: Error response from daemon: driver failed programming external connectivity on endpoint confident_lumiere (0c65a2b171446688825dcb7cb9dd0ecb366740d9cbb2dacf10341c8bc6368fde): Bind for 0.0.0.0:8888 failed: port is already allocated.
Elena@Elena-DELL MINGW64 /c/Program Files/Docker Toolbox $