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PengNi / ccsmeth

Detecting DNA methylation from PacBio CCS reads
BSD 3-Clause Clear License
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install error #1

Closed BoWangXJTU closed 2 years ago

BoWangXJTU commented 2 years ago

Hi Peng Ni, When I install the methccs, but I got this error report as follows:

FileNotFoundError: [Errno 2] No such file or directory: '/home/wangbo/softwares/methccs-master/deepsmrt/_version.py'

Please get me a help.

Yours, Bo

PengNi commented 2 years ago

Hi @BoWangXJTU , thanks for your interest.

methccs has not been packaged yet. It is also lack of documentation, and still under development. So now it cannot be installed. We are writing the paper about it, and hope we can done the work in months.

For now please use commands like python methccs/align_subreads.py.

Best, Peng

BoWangXJTU commented 2 years ago

Thank you for your reply. This tool 'methccs' is a great work, and it will be a 'game changer' in PacBio HiFi methylation calling field. Best, Bo

PengNi commented 2 years ago

closing this cause ccsmeth now can be installed.