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PengNi / ccsmeth

Detecting DNA methylation from PacBio CCS reads
BSD 3-Clause Clear License
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Installing ccsmeth #14

Closed priyambial123 closed 2 years ago

priyambial123 commented 2 years ago

Hello

I could not install the ccsmeth. I ran the commands in the linux cluster. I tried with both commands given for installing ccsmeth.

python setup.py install

No local packages or working download links found for torch<=1.7.0,>=1.2.0
error: Could not find suitable distribution for Requirement.parse('torch<=1.7.0,>=1.2.0')
pip install ccsmeth
`
  Building wheel for pysam (setup.py) ... error
  ERROR: Command errored out with exit status 1:

Has anyone come across such issues?

Thanks Priya

priyambial123 commented 2 years ago

I could install pysam separately in the conda environment and could run the scripts in ccsmethenv