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PengNi / ccsmeth

Detecting DNA methylation from PacBio CCS reads
BSD 3-Clause Clear License
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optimize ccsmeth call_mods procedure #20

Closed PengNi closed 1 year ago

PengNi commented 2 years ago

now ccsmeth call_mods: call mods -> save as per_readsite.tsv -> gathering per_read modinfo -> save as modbam format.

maybe call_mods -> directly save as modbam format is a better way.

olaraym commented 1 year ago

I think call_mods saving directly as modbam format is a better way because it will allow for calling the modification frequencies.

PengNi commented 1 year ago

see commit 6d5113d