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PengNi / ccsmeth

Detecting DNA methylation from PacBio CCS reads
BSD 3-Clause Clear License
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call_mod error in vision 0.5.0 #50

Open Songmg-Nwafu opened 5 months ago

Songmg-Nwafu commented 5 months ago

Hello, @PengNi , I faced this problem when I run call_mod in vision 0.5.0, but not in vision 0.4.1.

This is my script: CUDA_VISIBLE_DEVICES=1 ccsmeth call_mods \ --input ./CD.hifi.CG_chr10.r10k_tdata.tsv \ --output ./testing_res \ --model_file ./trian_model/attbigru2s.betterthanlast.b21_epoch7.ckpt \ --model_type attbigru2s --threads 2 --threads_call 2 &

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PengNi commented 5 months ago

Hi @Songmg-Nwafu , thank you very much for reporting this bug, I have fixed it. Please use the latest commit of ccsmeth.

Best, Peng