Call plant methylation using hg002 trained model？

PengNi / ccsmeth

Detecting DNA methylation from PacBio CCS reads

BSD 3-Clause Clear License

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Closed BoWangXJTU closed 2 years ago

BoWangXJTU commented 2 years ago

Hi Dr. Peng Ni，

Could I use your trained hg002 model to call methylation in Arabidopsis or other plants ?

Best wishes,

Bo Wang

PengNi commented 2 years ago

Hi Bo, I did not test that, but our HG002 CpG model should work in CpG methylation detection in Sequel II CCS data of Arabidopsis or other plants.

Best, Peng

BoWangXJTU commented 2 years ago

Thanks.