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PennLINC / CuBIDS

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
https://cubids.readthedocs.io/
MIT License
19 stars 9 forks source link

Update pybids requirement from <=0.16.4 to <=0.16.5 #315

Closed dependabot[bot] closed 4 months ago

dependabot[bot] commented 4 months ago

Updates the requirements on pybids to permit the latest version.

Release notes

Sourced from pybids's releases.

0.16.5

DOI

Release notes

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

What's Changed

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

New Contributors

Full Changelog: https://github.com/bids-standard/pybids/compare/0.16.4...0.16.5

Changelog

Sourced from pybids's changelog.

Version 0.16.5 (May 22, 2024)

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

Version 0.16.4 (November 30, 2023)

Bug-fix release in the 0.16.x series.

This release resolves a bug likely introduced in 0.9.0 (when PyBIDS started using SQL), in which boolean metadata fields with values of False were read in as True.

  • FIX: Ensure values of boolean metadata fields are preserved (#1034)
  • FIX: update config for PET tracer entity (#1018)
  • ENH: Clearer BIDSValidation error message (#1023)
  • STY: pacify codespell (#1029)
  • CI: Build(deps): Bump bids-examples from 064db11 to b6e5234 (#1031)
  • CI: Build(deps): Bump bids-examples from d039879 to 064db11 (#1028)
  • CI: Build(deps): Bump bids-examples from bfcc5c6 to d039879 (#1027)
  • CI: Bump bids-examples from 502c917 to bfcc5c6 (#1026)
  • CI: Bump bids-examples from 1c30c6e to 502c917 (#1025)
  • CI: Bump bids-examples from e857597 to 1c30c6e (#1021)
  • CI: Bump bids-examples from c557d1f to e857597 (#1019)
  • CI: Bump bids-examples from 75968b9 to c557d1f (#1011)
  • CI: Bump actions/checkout from 3 to 4 (#1024)

Version 0.16.3 (August 16, 2023)

Bug-fix release in the 0.16.x series.

... (truncated)

Commits
  • 7796c63 Merge pull request #1064 from bids-standard/rel/0.16.5
  • c744cec chore(test-pypi): Avoid failures on duplicate commit counts
  • 7b1f451 doc(changes): 0.16.5 release notes
  • 1220667 chore(zenodo): Update Zenodo file
  • ba4d0ac chore(mailmap): Add Basile Pinsard
  • 20007e5 Merge pull request #1057 from effigies/mnt/py312
  • ec017e7 CI: Run tests on Python 3.12
  • 4f1a161 FIX: Avoid rounding up for very small epsilons
  • 16c551a MNT: Use jinja2 PackageLoader instead of pkg_resources
  • 87eecc5 Merge pull request #1049 from alperkent/master
  • Additional commits viewable in compare view


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codecov-commenter commented 4 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 62.13%. Comparing base (fac7380) to head (fe991ea).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #315 +/- ## ======================================= Coverage 62.13% 62.13% ======================================= Files 9 9 Lines 1582 1582 ======================================= Hits 983 983 Misses 599 599 ```

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tsalo commented 4 months ago

@dependabot rebase