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PennLINC / CuBIDS

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
https://cubids.readthedocs.io/
MIT License
19 stars 9 forks source link

Update pybids requirement from <=0.17.0 to <=0.17.2 #327

Open dependabot[bot] opened 1 month ago

dependabot[bot] commented 1 month ago

Updates the requirements on pybids to permit the latest version.

Release notes

Sourced from pybids's releases.

0.17.2

Release Notes

Bug-fix release in the 0.17.x series.

Changes

New Contributors

Full Changelog: https://github.com/bids-standard/pybids/compare/0.17.1...0.17.2

Changelog

Sourced from pybids's changelog.

Version 0.17.2 (September 19, 2024)

Bug-fix release in the 0.17.x series.

  • BUG: symlink dirs treated as files during indexing (#1087)

Version 0.17.1 (September 06, 2024)

Bug-fix release in the 0.17.x series.

Mostly quiets down warnings generated by more recent versions of Pandas.

  • FIX: Create indices with object dtype (#1084)
  • MNT: Transfer validation tests to bids validator (#1081)

Version 0.17.0 (July 29, 2024)

Feature release in the 0.17.x series.

This release includes experimental support for MRS (BEP22) datasets and universal_pathlib <https://github.com/fsspec/universal_pathlib>__.

  • ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support (#1074)
  • ENH: Add MRS entities, path patterns (#1075)
  • STY: No parentheses after assert (#1065)
  • MNT: Bump bids-examples from 47c4da1 to 401f4cf (#1073)
  • MNT: Fix typo newly found by codespell (#1066)

Version 0.16.5 (May 22, 2024)

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)

... (truncated)

Commits
  • 623f58d REL: 0.17.2
  • 98cf782 MNT: Update mailmap and Zenodo ordering
  • fdb0cd9 Merge pull request #1088 from cookpa/cookpa-zenodo
  • 4dd026b DOC: Update zenodo.json with new contributer
  • fc692d2 Merge pull request #1085 from bids-standard/dependabot/submodules/bids-exampl...
  • 40c1028 test: Expect citation.cff in ds001
  • b6d1b29 Merge pull request #1087 from cookpa/traverse_link_dirs
  • 6ecffc7 ENH: add a test for datasets with symlinks
  • cdd3bc8 BUG: symlink dirs treated as files during indexing
  • 86c2818 Build(deps): Bump bids-examples from 4460013 to 7c18d68
  • Additional commits viewable in compare view


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