PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Improve plots #286

Closed tsalo closed 1 year ago

tsalo commented 1 year ago

Closes #284 and closes #277.

Changes proposed in this pull request

Documentation that should be reviewed

codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 87.55% and project coverage change: +3.54 :tada:

Comparison is base (ea0d0e1) 45.78% compared to head (8f9d7e0) 49.32%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #286 +/- ## ========================================== + Coverage 45.78% 49.32% +3.54% ========================================== Files 132 135 +3 Lines 12503 12265 -238 ========================================== + Hits 5724 6050 +326 + Misses 6779 6215 -564 ``` | [Impacted Files](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC) | Coverage Δ | | |---|---|---| | [aslprep/cli/parser.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC9jbGkvcGFyc2VyLnB5) | `86.74% <ø> (+3.01%)` | :arrow_up: | | [aslprep/niworkflows/interfaces/masks.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC9uaXdvcmtmbG93cy9pbnRlcmZhY2VzL21hc2tzLnB5) | `46.74% <0.00%> (ø)` | | | [aslprep/niworkflows/viz/plots.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC9uaXdvcmtmbG93cy92aXovcGxvdHMucHk=) | `29.60% <0.00%> (ø)` | | | [aslprep/sdcflows/interfaces/reportlets.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC9zZGNmbG93cy9pbnRlcmZhY2VzL3JlcG9ydGxldHMucHk=) | `0.00% <0.00%> (ø)` | | | [aslprep/sdcflows/workflows/base.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC9zZGNmbG93cy93b3JrZmxvd3MvYmFzZS5weQ==) | `38.29% <ø> (ø)` | | | [aslprep/sdcflows/workflows/syn.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC9zZGNmbG93cy93b3JrZmxvd3Mvc3luLnB5) | `100.00% <ø> (ø)` | | | [aslprep/tests/conftest.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC90ZXN0cy9jb25mdGVzdC5weQ==) | `100.00% <ø> (ø)` | | | [aslprep/workflows/asl/\_\_init\_\_.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC93b3JrZmxvd3MvYXNsL19faW5pdF9fLnB5) | `100.00% <ø> (ø)` | | | [aslprep/workflows/asl/outputs.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC93b3JrZmxvd3MvYXNsL291dHB1dHMucHk=) | `98.41% <ø> (+54.30%)` | :arrow_up: | | [aslprep/workflows/asl/plotting.py](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC#diff-YXNscHJlcC93b3JrZmxvd3MvYXNsL3Bsb3R0aW5nLnB5) | `100.00% <ø> (+34.54%)` | :arrow_up: | | ... and [26 more](https://app.codecov.io/gh/PennLINC/aslprep/pull/286?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC) | | ... and [11 files with indirect coverage changes](https://app.codecov.io/gh/PennLINC/aslprep/pull/286/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=PennLINC)

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