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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update sdcflows requirement from <=2.8.1 to <=2.9.0 #422

Closed dependabot[bot] closed 4 months ago

dependabot[bot] commented 5 months ago

Updates the requirements on sdcflows to permit the latest version.

Release notes

Sourced from sdcflows's releases.

2.9.0

Release notes

Feature release in the 2.9.x series.

The main change is that B0FieldIdentifiers with special characters are now sanitized and exposed through a FieldmapEstimator.sanitized_id attribute.

Workflow names and input/output connections will use sanitized_id, to ensure compatibility with filenames and workflow graph generation. Internal lookup tables will continue to use the the unsanitized bids_id.

Changes

New Contributors

Full Changelog: https://github.com/nipreps/sdcflows/compare/2.8.1...2.9.0

Changelog

Sourced from sdcflows's changelog.

2.9.0 (June 13, 2024)

Feature release in the 2.9.x series.

The main change is that B0FieldIdentifiers with special characters are now sanitized and exposed through a FieldmapEstimator.sanitized_id attribute.

Workflow names and input/output connections will use sanitized_id, to ensure compatibility with filenames and workflow graph generation. Internal lookup tables will continue to use the the unsanitized bids_id.

  • FIX: Update suffix only when finding related fieldmap files (#436)
  • FIX: Remove unused ANTs parameter that was removed in 2.4.1 (#431)
  • RF: Add sanitized_id field to FieldmapEstimation (#444)
  • DOC: Un-mock the already-imported numpy (#440)
  • CI: Bump actions/cache from 3 to 4 (#429)

2.8.1 (January 22, 2024)

Bug-fix release in the 2.8.x series.

Fixes doc builds and CLI support for fieldmapless workflows. Introduces support for BIDS-URIs.

  • FIX: Enable fieldmapless by default in CLI (#426)
  • FIX: Pandoc requires Texlive to render LaTeX in notebook (#427)
  • FIX: New test test_wrangler_URIs had the wrong oracle (#425)
  • ENH: Resolve BIDS-URIs (#349)
  • TEST: Use less confusing function name for testing CLI with --dry-run (#424)
  • MNT: Bump actions/download-artifact from 3 to 4 (#418)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#417)
  • CI: Move PR doc build into main doc build, add texlive to build dependencies (#428)

2.8.0 (January 10, 2024)

New feature release in the 2.8.x series.

This release fixes a bug in converting SyN-SDC displacements to fieldmaps, resulting in exaggerated corrections. As this makes changes to the structure of a workflow and the expected inputs of a workflow node, this release is considered a minor release.

  • FIX: Derive field from SyN displacements using EPI affine (#421)
  • FIX: Change os.basename to os.path.basename (#419)
  • DOC: Add @​smeisler to contributors (#420)

2.7.0 (December 18, 2023)

New feature release in the 2.7.0 series.

... (truncated)

Commits
  • 83062d1 DOC: 2.9.0 changelog
  • f858dd4 Update Zenodo
  • fa9e716 Merge pull request #444 from effigies/fix/normalize-fmapids
  • fb55b65 TEST: Expected behavior with safe and unsafe bids_ids
  • c674fc1 RF: Add sanitized_id field to FieldmapEstimation
  • 6fe5b38 Reapply "Remove non-alphanumeric characters from workflow names and output en...
  • 57316e4 Merge pull request #443 from nipreps/revert-434-fmapid
  • a8ccd27 Revert "Remove non-alphanumeric characters from workflow names and output ent...
  • b10de08 Merge pull request #434 from tsalo/fmapid
  • a18cdb2 Update test.
  • Additional commits viewable in compare view


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codecov-commenter commented 5 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (f3c0bc4) to head (25dc81b).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #422 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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