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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update sdcflows requirement from <=2.9.0 to <=2.10.0 #426

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 4 months ago

Updates the requirements on sdcflows to permit the latest version.

Release notes

Sourced from sdcflows's releases.

2.10.0

Release Notes

Feature release in the 2.10.x series.

The main change is a bugfix when fitting multi-level B-Splines to some noisy fieldmaps. While theoretically nice, the multi-level fitting does not really bring anything immediately as we are not generally inverting the distortion. In this release, the default fitting has been changed to single-level B-Splines, with a spacing similar to TOPUP's defaults.

With thanks to Sunjae Shim (@​sjshim) for sharing Spiral-echo fieldmaps that were failing prior the patch in #453.

What's Changed

New Contributors

Full Changelog: https://github.com/nipreps/sdcflows/compare/2.9.0...2.10.0

Changelog

Sourced from sdcflows's changelog.

2.10.0 (July 04, 2024)

Feature release in the 2.10.x series.

The main change is a bugfix when fitting multi-level B-Splines to some noisy fieldmaps. The multi-level fitting, while being theoretically nice, does not really bring anything immediately as we are not generally inverting the distortion. In this release, the default fitting has been change to single-level B-Splines, with a spacing similar to TOPUP's defaults.

With thanks to Sunjae Shim (@​sjshim) for sharing Spiral-echo fieldmaps that were failing prior the patch in #453.

CHANGES

  • FIX: Revision of the B-Spline fitting code (#453)
  • FIX: Building Docker image on ARM64 devices (#449)
  • ENH: Improve plots in jupyter notebook (#452)
  • DOC: Fix ValueError in notebook's output. (#450)

2.9.0 (June 13, 2024)

Feature release in the 2.9.x series.

The main change is that B0FieldIdentifiers with special characters are now sanitized and exposed through a FieldmapEstimator.sanitized_id attribute.

Workflow names and input/output connections will use sanitized_id, to ensure compatibility with filenames and workflow graph generation. Internal lookup tables will continue to use the the unsanitized bids_id.

  • FIX: Update suffix only when finding related fieldmap files (#436)
  • FIX: Remove unused ANTs parameter that was removed in 2.4.1 (#431)
  • RF: Add sanitized_id field to FieldmapEstimation (#444)
  • DOC: Un-mock the already-imported numpy (#440)
  • CI: Bump actions/cache from 3 to 4 (#429)

2.8.1 (January 22, 2024)

Bug-fix release in the 2.8.x series.

Fixes doc builds and CLI support for fieldmapless workflows. Introduces support for BIDS-URIs.

  • FIX: Enable fieldmapless by default in CLI (#426)
  • FIX: Pandoc requires Texlive to render LaTeX in notebook (#427)

... (truncated)

Commits
  • 08e198f rel(2.10.0): Update .zenodo.json
  • d02ef37 rel(2.10.0): Update credit files [skip ci]
  • 4a4f321 rel(2.10.0): Update CHANGES [skip ci]
  • 581e460 Merge pull request #453 from nipreps/fix/revise-bspline-fitting
  • 1883c15 fix: restore demeaning, resample in sloppy mode
  • e5c0f89 maint: refresh cache on circle
  • b44d2bb fix: do not fit intercept, improve tests
  • bbd9261 enh: consider intercept for error calculation
  • 00519d3 fix: revision of the b-spline fitting code
  • bb89bdc Merge pull request #452 from nipreps/enh/improve-jupyter-notebook
  • Additional commits viewable in compare view


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codecov-commenter commented 4 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (39d5853) to head (e0b97aa).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #426 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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tsalo commented 4 months ago

@dependabot rebase

tsalo commented 3 months ago

@dependabot rebase