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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update pybids requirement from <=0.16.5 to <=0.17.0 #433

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 3 months ago

Updates the requirements on pybids to permit the latest version.

Release notes

Sourced from pybids's releases.

0.17.0

DOI

Release notes

Feature release in the 0.17.0 series.

This release includes experimental support for MRS (BEP22) datasets and universal_pathlib.

Changes

  • ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support (#1074)
  • ENH: Add MRS entities, path patterns (#1075)
  • STY: No parentheses after assert (#1065)
  • MNT: Bump bids-examples from 47c4da1 to 401f4cf (#1073)
  • MNT: Fix typo newly found by codespell (#1066)

Full Changelog: https://github.com/bids-standard/pybids/compare/0.16.5...0.17.0

Changelog

Sourced from pybids's changelog.

Version 0.17.0 (July 29, 2024)

Feature release in the 0.17.0 series.

This release includes experimental support for MRS (BEP22) datasets and universal_pathlib <https://github.com/fsspec/universal_pathlib>__.

  • ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support (#1074)
  • ENH: Add MRS entities, path patterns (#1075)
  • STY: No parentheses after assert (#1065)
  • MNT: Bump bids-examples from 47c4da1 to 401f4cf (#1073)
  • MNT: Fix typo newly found by codespell (#1066)

Version 0.16.5 (May 22, 2024)

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

Version 0.16.4 (November 30, 2023)

Bug-fix release in the 0.16.x series.

This release resolves a bug likely introduced in 0.9.0 (when PyBIDS started using SQL), in which boolean metadata fields with values of False were read in as True.

  • FIX: Ensure values of boolean metadata fields are preserved (#1034)
  • FIX: update config for PET tracer entity (#1018)
  • ENH: Clearer BIDSValidation error message (#1023)
  • STY: pacify codespell (#1029)
  • CI: Build(deps): Bump bids-examples from 064db11 to b6e5234 (#1031)

... (truncated)

Commits
  • 062ce4c DOC: 0.17.0 changelog
  • c6b433f Update Zenodo
  • 47ddf00 Merge pull request #1074 from akhanf/upath
  • 80b9391 Apply suggestions from code review
  • 6c2ea5e Merge pull request #1075 from effigies/bep022
  • a8d46f9 Merge pull request #1073 from bids-standard/dependabot/submodules/bids-exampl...
  • 877846b TEST: Expect more files
  • a490c76 ENH: Add MRS entities, path patterns
  • 022024d fsspec and upath for cloud/remote paths
  • 2468632 Build(deps): Bump bids-examples from 47c4da1 to 401f4cf
  • Additional commits viewable in compare view


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codecov-commenter commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (27fa054) to head (14aab98).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #433 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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