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PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update niworkflows requirement from ~=1.10.0 to ~=1.11.0 #434

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 3 months ago

Updates the requirements on niworkflows to permit the latest version.

Changelog

Sourced from niworkflows's changelog.

1.11.0 (July 31, 2024)

New minor release to start the 1.11.x series.

The major changes include:

  • a deprecation to T1w-only based template processing
  • addition of a new dependency acres for accessing package data

However, this is still backwards compatible with the 1.10.x series.

  • MAINT: Depend on acres for data access
  • ENH: Add PrepareDerivative/SaveDerivative interfaces (#885)
  • ENH: Make template dimensions support T2w as well (#879)
  • ENH: Modify FSSource to output T2 (#868)
  • FIX: Set cal_max in the NIfTI header for visualization after IntensityClip (#878)
  • FIX: Remove accidental MRIQC dependency, allow app config to be passed to workflow plugin (#876)
  • TEST: Fix plugin invocation, use an initializer that can be verified (#880)

1.10.2 (June 10, 2024)

Bug-fix release in the 1.10.x series

  • ENH: Modify FSSource to output T2 (#868)
  • STY: Apply ruff/flake8-implicit-str-concat rule ISC001 (#870)
  • STY: Remove extraneous quotes (#859)
  • STY: Apply assorted ruff/refurb rules (#867)
  • MNT: update vendored docs files (#834)
  • MNT: Fix deprecation error in CI (#866)

1.10.1 (March 06, 2024)

Bug-fix release in the 1.10.x series

  • ENH: Allow alternative extensions when creating a BIDS skeleton (#858)
  • ENH: Parsing for space+cohort structure (#857)

1.10.0 (December 13, 2023)

New feature release in the 1.10.x series.

This release has several improvements targeting ASLPrep and MRIQC, particularly around BIDS tooling and workflow plugins. We also drop our use of Convert3D in favor of nitransforms, allowing downstream projects to remove this non-Python dependency as needed.

Some fixes change workflow structure, so please test before upgrading.

  • FIX: Copy header to ensure mask is really aligned (#844)
  • FIX: Correctly use ignore_initial_volumes in ConfoundsCorrelationPlot (#846)

... (truncated)

Commits
  • f972df5 DOC: Add acres to dependencies
  • 8eae6ae rel(1.11.0): update changes
  • 881bfd0 MAINT: Replace Loader class with acres
  • f765e53 Merge pull request #885 from effigies/rf/split-derivatives-datasink
  • 8c14cbe TEST: Parametrize all DerivativesDataSink tests
  • b297129 PY39: Define strict zip if not builtin
  • dac204c DOC: Fix docstring
  • a526794 Update niworkflows/interfaces/bids.py
  • edf450b STY: Pacify flake8
  • 23e1bbc TEST: Test singular and decomposed interfaces
  • Additional commits viewable in compare view


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codecov-commenter commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (397e02a) to head (8fe7741).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #434 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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tsalo commented 3 months ago

@dependabot rebase