PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data
https://aslprep.readthedocs.io
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Update fmriprep requirement from <=24.1.0,>=23.2 to >=23.2,<=24.1.1 #446

Closed dependabot[bot] closed 2 days ago

dependabot[bot] commented 3 weeks ago

Updates the requirements on fmriprep to permit the latest version.

Changelog

Sourced from fmriprep's changelog.

24.1.1 (October 10, 2024)

Bug fix release in the 24.1.x series.

Precomputed functional derivatives were not being correctly detected, and a couple fixes for rare issues.

  • FIX: Remove checks for unit zooms and symmetric rotations in template warp (#3376)
  • FIX: Stop excluding FS minc_modify_header used during fallback registration (#3372)
  • FIX: Repair search for precomputed bold references (#3370)
  • FIX: Repair search for precomputed transforms (#3369)

24.1.0 (September 16, 2024)

New feature release in the 24.1.x series.

Handling of gradient echo fieldmaps is improved.

  • FIX: Select volumetric dseg.tsv from recent TemplateFlow releases (#3257)
  • RF: Adapt to less T1w-centric smriprep (#3333)
  • RF: Use acres over vendored data loader (#3323)
  • DOC: Add benchmark page (#3312)
  • MAINT: Move to tox to simplify test/CI setup (#3326)
  • CI: Fix expected outputs for fieldmaps (#3321)

24.0.1 (July 16, 2024)

Bug fix release in the 24.0.x series.

This release resolves a bug with multi-volume single-band references. If multiple volumes are found, they are processed in the same way as the BOLD series is processed to produce a motion-correction reference.

  • FIX: Validate and summarize multi-volume sbrefs (#3320)
  • DOC: Address errors/warnings in RTD builds (#3325)
  • DOC: Read html_baseurl from RTD environment, if available (#3324)

24.0.0 (June 17, 2024)

New feature release in the 24.0.x series.

This release is an incremental improvement on 23.2.x, with some fixes for bugs discovered in the updated workflow.

New features include separation of HTML reports by session for subjects with many BOLD runs, a new --fs-no-resume option to improve interoperability with less typical FreeSurfer directories, such as those generated by longitudinal FreeSurfer or FastSurfer, and adoption of DatasetLinks and BIDS-URIs, to follow the recommendations of recent versions of BIDS.

... (truncated)

Commits
  • 1248b63 REL: 24.1.1
  • 106cf0c FIX: Stop excluding FS minc_modify_header used during fallback registration (...
  • daefc6c fix: Remove checks for unit zooms and symmetric rotations in template warp (#...
  • 1607996 FIX: Drop safeguard errors; manually verified weird references
  • 23c4636 fix: Accept warps with isotropic spacing
  • 08933bf DOC: Update changelog
  • 565d1a9 FIX: Repair and test query for precalculated baseline/boldref files (#3370)
  • ce31460 FIX: Repair search for precomputed transforms (#3369)
  • d7bf47b REL: 24.1.0
  • 01797fd Pin bids-validator, try 2
  • Additional commits viewable in compare view


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codecov-commenter commented 3 weeks ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.34%. Comparing base (d484c8e) to head (cf6979c).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #446 +/- ## ======================================= Coverage 84.34% 84.34% ======================================= Files 37 37 Lines 3986 3986 ======================================= Hits 3362 3362 Misses 624 624 ```

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dependabot[bot] commented 2 days ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.