Bring up to date with fMRIPrep 24.1.1

PennLINC / aslprep

Preprocessing of arterial spin labeling (ASL) data

https://aslprep.readthedocs.io

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Closed tsalo closed 3 weeks ago

tsalo commented 3 weeks ago

Closes #386.

Change --asl2t1w-init to --asl2anat-init. THIS IS A BREAKING CHANGE.
Change --asl2t1w-dof to --asl2anat-dof. THIS IS A BREAKING CHANGE.
Switch from black to ruff.
Copy over current (as of 24.1.1) fMRIPrep code and modify cases where there's a conflict.